Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq6 277 1e-68 seq8 208 6e-48 seq1 113 3e-19 >seq6 Length=7673328 Score = 277 bits (306), Expect = 1e-68 Identities = 700/1048 (67%), Gaps = 20/1048 (2%) Strand=Plus/Plus Query 281442 TACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTG 281501 |||||||||| || | ||| || |||||||| ||||| || || ||||| | || || | Sbjct 5418337 TACCATTGGCGTCGATATCGAAAGTGACTTCGATTTGCGGAACACCTCTTGGTGCTGGAG 5418396 Query 281502 GGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCAC 281561 | || || || | |||| | || || ||||||||||||| || | || || | Sbjct 5418397 GAATGCCCGTCAGCTCAAATTTGCCAAGGATATTATTATCTTTCGTCATCGCTCTCTCTC 5418456 Query 281562 CCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGG 281621 |||| | | ||||| ||| | | ||||||||| || || || || || ||||| Sbjct 5418457 CCTCATAGACCTGGATGAGCACTCCTGGTTGATTATCGGAGTATGTGGTGAA-CGTCTGG 5418515 Query 281622 AT-TTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 | | ||| || ||||| ||||| || | ||| | | ||||||||| || ||||| Sbjct 5418516 GTCTGTTTTGTTGGTATTGTCGTGTTCCTCTTAATCAAAGTGGTCATAACGCCGCCAGCG 5418575 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCA 281740 || || | ||| | || | ||||| || || | || | | || ||| | ||| Sbjct 5418576 GTCTCAATACCCAATGATAACGGAGTCACGTCCAGCAGAAGTAGATCTTGGA---CTTCC 5418632 Query 281741 TCAG-TTTG--ACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797 |||| |||| || ||||| || || |||| || |||||||| |||||||| || Sbjct 5418633 TCAGATTTGTCGCCGTGCAGAATGGCCGCCTGAACTGCTGCACCATAAGCAACAGCCTCG 5418692 Query 281798 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGAAGTTGTCT 281856 || ||||||| | || || |||| || || || || |||| ||||| || || | Sbjct 5418693 TCTGGATTAATGGATTTGTTCAGTTCCTTGCCGTTAAAGAAATCTTGAAGTAACTTCT-G 5418751 Query 281857 TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATC 281916 | || || || | || || || || |||| || || || || || | |||||| Sbjct 5418752 AATTTTTGGTATTCTAGTGGAACCACCGACTAGAACGATGCTGTGAACTTGAGCTTTATC 5418811 Query 281917 CAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGA 281976 || || | ||| | | | ||||| |||||||| ||| |||||||| || | Sbjct 5418812 CATCTTCGCATCTCTAAGAGCCTTTTCCACGGGTTCGAGAGTGCTTCTAAACAGATCAGC 5418871 Query 281977 ACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAAC 282034 || || || |||||| | |||||||| || || | || || ||||| || || ||| Sbjct 5418872 GCAGAGCTCCTCGAATCTGGCTCTAGT--GACCGATGTATAGAAGTCAATCCCCTCAAAC 5418929 Query 282035 AAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCA 282094 || ||||||| ||||| | | || ||||| || | | | || || | || Sbjct 5418930 AATGAATCAATCTCAATGCTTGCCTGCGTCGACGAGCTCAACGTTCTCTTTGCTCTCTCG 5418989 Query 282095 CATGCTGTCCTTAGTCTTCGTAAGGCT-TTTGCTGATTGATTCAAATCTGTTTTATATTT 282153 || || ||||| | | || | ||| | | | | || ||| |||| | || ||||| Sbjct 5418990 CAAGCAGTCCTCAAACGTCTCAGAGCTCTCTTGTTACTG-CTCAGATCTTTCTTGTATTT 5419048 Query 282154 TCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATCAAAATCTTCACCTCCC 282211 || ||||| |||| |||| ||| | || | || |||||||| || ||||| || Sbjct 5419049 CCTTTTGAATTCTT--GCACAAAATGGTTCACCATTCGGTTATCAAAGTCCTCACCACCA 5419106 Query 282212 AATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGA 282271 | | || | || | ||| | | | |||| ||| | ||||| || | | || || Sbjct 5419107 AGATGCGTGTCGCCAGCCGTGGATTTCACTTCGAAGATACCATCCTCGATCGTCAGAATC 5419166 Query 282272 GTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGG 282331 | || ||| ||| |||||||||| ||||| || || |||||| |||| | Sbjct 5419167 GACACGTCAAAGGTACCACCACCCAAGTCAAAGATCAGAACATTCTTTTCACCTGCAGCC 5419226 Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||||||||||||||| || | ||||| || || || || || || ||||| | ||| Sbjct 5419227 TTTTTATCAAGACCATATGCTATCGCAGCGGCTGTGGGCTCGTTTATTATTCTGAGAACG 5419286 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || | |||||||| || ||||| || || |||||||| || || || || ||||| Sbjct 5419287 TTTAAGCCAGCAATAGCGCCGGCATCCTTTGTCGCTTGTCTCTGAGAGTCATTGAAATAA 5419346 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTA 282479 || || ||||| || ||||||| ||||| Sbjct 5419347 GCTGGCACAGTGATGACGGCATTTGTTA 5419374 >seq8 Length=7313927 Score = 208 bits (230), Expect = 6e-48 Identities = 715/1100 (65%), Gaps = 16/1100 (1%) Strand=Plus/Minus Query 281380 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 281439 ||| |||||||| || || || ||| || || || || |||| | ||||| || Sbjct 2116182 ATTGGTAATAGTGATCTTGTTCTCCTTGCCAGTAGACTTGTCCACGGCGGAGACATTGAG 2116123 Query 281440 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 281499 |||||| || ||||| | ||| || || || ||||| ||||| || || | | || || Sbjct 2116122 AATACCGTTCGCATCGATATCGAACGTCACCTCAATCTGAGGAACTCCACGAGGTGCTGG 2116063 Query 281500 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 281559 ||| || || | | ||| | ||||| ||||||||| || || | || || Sbjct 2116062 TGGAATACCGCTAAGCTCGAATTTGCCCAGTAAATTATTATCCTTGGTCATGGCGCGCTC 2116003 Query 281560 ACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 281619 ||||||| | | || || || | | |||||| || | ||||||||||| | Sbjct 2116002 ACCCTCGTATACCTGAATCAACACGCCGGGTTGATTGTCGGCGTAAGTTGTAAAGGTTTG 2115943 Query 281620 GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGC 281679 | | || || || || || || || | ||||| |||||| | |||||| || Sbjct 2115942 AGTCTGCTTCGTCGGGATGGTGGTATTCCTCTTAATAAGCGCGGTCATGACACCACCGGC 2115883 Query 281680 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTC 281739 || || | ||| ||||| || ||||||||||| | | | | | ||| | | || Sbjct 2115882 AGTCTCAATACCCAGAGAGAGCGGAGTGACATCGAGCAAAAGCAAGTCTTGCACCTCCTC 2115823 Query 281740 ATCAGTT-TGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 281797 | | || | ||| ||||| |||| || || | || || || ||||| ||||| ||| Sbjct 2115822 -TGATTTATCACCGTGCAAGA-TAGCCGCCTGTACTGCCGCGCCGTATGCCACAGCCTCA 2115765 Query 281798 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGAAGTTGTCT 281856 || ||||| | || || || || | ||| ||||||||||| | ||| | || || | Sbjct 2115764 TCGGGATTGATAGATTTGTTGAGCTCTTTGCCATTGAAAAAGTCTTGCAGGAGCTTCT-G 2115706 Query 281857 TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATC 281916 | || ||||| || | || ||||| ||||| || || ||||| | || | ||| || Sbjct 2115705 AATTTTGGGAATTCGCGTAGAGCCTCCGACTAAAACGATATCATGGATTTGAGCTTTGTC 2115646 Query 281917 CAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGA 281976 || || | || | |||||||||||||||||| | | | || | || | Sbjct 2115645 CATCTTGGCGTCGCGCAGCGACTTTTCAACGGGTTCAAGAGTACCACGGAAGAGATCGGC 2115586 Query 281977 ACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAA 282036 || ||||| ||||| ||||| || | | | | ||||||||||||| |||| Sbjct 2115585 GCAGAGTTCCTCGAAACGAGCTCGGGTGATGGAGGTGTAGAAATCAATTCCTTCATACAA 2115526 Query 282037 AGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACA 282096 ||||| | || || | | || || || || || || | || || |||||||| || Sbjct 2115525 CGAATCGATCTCGATGCTGGCCTGGGTGGAGGATGACAGGGTGCGCTTGGCACGTTCGCA 2115466 Query 282097 TGCTGTCCTTAGTCTTCGTAAG---GCTTTTGCT-GATTGATTCAAATCTGTTTTATATT 282152 ||||| | || | || ||| || ||| | || | ||||||| | || |||| Sbjct 2115465 GGCTGTGCGAAGACGACG-AAGTGCGCGTTTATTCGA---AGTCAAATCCTTCTTGTATT 2115410 Query 282153 TTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCA 282212 | | |||||| || | || | | || | || |||||||| || ||||| |||| Sbjct 2115409 TACGCTTGAATTCCTGTACGAAGTGATTGACCATGCGGTTATCAAAGTCCTCACCACCCA 2115350 Query 282213 ATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAG 282272 | | ||||| ||| | ||| | | || | ||| | |||||||||| || || | | Sbjct 2115349 AATGAGTATCTCCCGCCGTGGACTTGACCTCGAAGATACCATCTTCAATAGTCAGGATGG 2115290 Query 282273 TAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGT 282332 || || || |||||||| | |||||| ||||| || || || | | | | Sbjct 2115289 ACACGTCGAAAGTGCCACCACCGAGATCAAAGATAAGGACGTTTCGCTCGCCG-GTGGCT 2115231 Query 282333 TT-TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || |||||||| |||| || || || || || || || ||||| | ||| ||| Sbjct 2115230 TTCTTGTCGAGACCATATGCAATTGCGGCGGCGGTGGGCTCGTTGATAATACGCAATACA 2115171 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || | || | || | || || || || || || || | || || ||||| || || Sbjct 2115170 TTTAAGCCCGAGATGGTACCAGCGTCCTTGGTTGCCTGACGCTGCGAGTCGTTGAAGTAA 2115111 Query 282452 GCAGGAACAGTAATAACGGC 282471 || || || || || || || Sbjct 2115110 GCGGGGACGGTGATCACAGC 2115091 >seq1 Length=15679321 Score = 113 bits (124), Expect = 3e-19 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 282322 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 282381 ||| |||| | |||||| | ||||| |||| ||||| || |||||||||||||| | Sbjct 7089237 TTTATCTTCTTGTTTATCCATTCCATAAGCAAGTGCAGCTGCGGTTGGTTCATTAATTAC 7089296 Query 282382 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 282441 | | |||||| | |||||||| || |||||||| || ||||||| ||| ||||| Sbjct 7089297 ACGAAGAACATTCAATCCAGCAATCTGACCAGCATCTTTCGTTGCTTGTCGTTGAGAATC 7089356 Query 282442 GTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT 282481 |||||||| || || ||||| ||||| |||| ||||| Sbjct 7089357 ATTAAAATACGCTGGTACAGTGATAACAGCATTCTTTACT 7089396 Score = 102 bits (112), Expect = 6e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 86119 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 86178 || || ||||| || ||||| |||||||||||||||| |||||||| || || ||| Sbjct 7089259 CCATAAGCAAGTGCAGCTGCGGTTGGTTCATTAATTACACGAAGAACATTCAATCCAGCA 7089318 Query 86179 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 86238 || | | ||| ||| |||||||||| || | ||||||||||| ||||||||||| Sbjct 7089319 ATCTGACCAGCATCTTTCGTTGCTTGTCGTTGAGAATCATTAAAATACGCTGGTACAGTG 7089378 Query 86239 ATAACTGCTTTATT 86252 ||||| || || || Sbjct 7089379 ATAACAGCATTCTT 7089392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740491164384936