Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq3 185 2e-41 seq14 176 9e-39 seq71 131 3e-25 seq4 100 6e-16 >seq3 Length=10655775 Score = 185 bits (204), Expect = 2e-41 Identities = 171/217 (79%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || |||| |||| || ||||||||||| || ||||||||||| || | | || Sbjct 2297759 ACGGAGGACTAGATGCAATGTGGATTCTTTCTGAATGTTATAATCAGAAAGCGTACGGCC 2297818 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||| |||||||||||||||||||| | ||| || |||||||| || |||||||| || Sbjct 2297819 GTCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTT 2297878 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 |||||||| || || || |||||||| ||||| || | || |||||||| || || Sbjct 2297879 GTCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCTGATGCCTCAACTTCCAATGTAAT 2297938 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| ||||||| || || ||||| ||||||||| Sbjct 2297939 GGTCTTTCCTGTCAGGGTTTTGACAAAGATCTGCATT 2297975 Score = 163 bits (180), Expect = 6e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | ||||| ||||| || |||| |||||||| ||||| |||||||| |||| Sbjct 2297518 TACCACCACGTAAACGGAGAACCAAATGCAAGGTAGATTCCTTCTGAATATTATAGTCAG 2297577 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||| ||||| ||||||||||| || ||||| | ||| || ||||| || | Sbjct 2297578 AAAGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGGG 2297637 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||| || | |||||| || || || ||||| || || || || | || | Sbjct 2297638 GGATTCCTTCTTTGTATTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGACGCCTCAA 2297697 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||| || || ||||| ||||||| || || ||||| ||||||||| Sbjct 2297698 TTTCCAACGTGATGGTCTTTCCTGTCAGGGTTTTGACAAAAATCTGCATT 2297747 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | || || || | ||| || |||||||||||||| |||||||| || ||| Sbjct 2294636 CCGCCTCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTCTGAATATTATAGTCGGAT 2294695 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | || || ||||| || || || || || ||||||||||||||||| ||||| Sbjct 2294696 AAAGTCCGTCCATCCTCTAGCTGCTTGCCCGCGAAAATTAGTCTTTGTTGATCGGGAGGA 2294755 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| |||||||| || || || || || ||||||||||| || || ||| || Sbjct 2294756 ATGCCTTCTTTATCTTGTATTTTCGCCTTCACGTTTTCAATCGTGTCTGAAGCTTCGACC 2294815 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || || || || || | || || ||||| |||||||| Sbjct 2294816 TCCAGCGTAATAGTTTTACCAGTGAGAGTTTTGACAAAAATCTGCAT 2294862 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || || || ||||| ||||| || || ||||| |||||||| | | | | || ||| Sbjct 2297991 AGGACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATCAGACAAAGTACGTCCATCT 2298050 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || || || |||||||||||||| | | || ||||| || || || ||||| ||||| Sbjct 2298051 TCCAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCTTTATCC 2298110 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || |||||||||||||| || || || || ||| || || ||||| | |||||| ||| Sbjct 2298111 TGGATCTTTGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCAACTTCAAGAGTTATGGTC 2298170 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || ||||| ||||| || || |||||||| Sbjct 2298171 TTCCCGGTCAATGTCTTCACGAAAATCTGCAT 2298202 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657 || ||| || |||| || ||||||||||| ||||| || ||||| || | | |||||| Sbjct 2294878 CAAAACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAGAAAGTGTACGACCGTC 2294937 Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 ||| |||||||| || || ||||| | || ||||| || || || ||||||||||| || Sbjct 2294938 TTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGTTGGTCCGGTGGGATTCCTTCCTTGTC 2294997 Query 82718 TT 82719 || Sbjct 2294998 TT 2294999 >seq14 Length=6127344 Score = 176 bits (194), Expect = 9e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||||||||| | || || |||||||| ||||| || || || ||||| Sbjct 6014215 CCTCCACGAAGACGCAGAACAAGATGAAGCGTAGATTCCTTCTGAATGTTGTAGTCAGAA 6014274 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| |||| || || |||||||| |||||||||||||| | | ||||||||||||||| Sbjct 6014275 AGAGTTCTGCCATCCTCTAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGAGGA 6014334 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| |||||||| ||||| ||||| |||||||| || || ||| || ||| || Sbjct 6014335 ATACCTTCTTTATCTTGGATCTTAGCTTTGACATTTTCGATAGTGTCAGAAGCTTCCACC 6014394 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 || | || || || || || || | || |||||||| || ||||| || Sbjct 6014395 TCAAGGGTGATGGTTTTTCCAGTGAGGGTTTTTACAAAGATTTGCATGAT 6014444 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| | ||||||||| | || || || ||||||||||| || || || || || Sbjct 6013987 CCTCCTCGAAGACGCAGAACCAGATGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGAA 6014046 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| |||| |||||||| | ||||| ||||||||||| | | ||| || || ||||| Sbjct 6014047 AGAGTTCTGCCGTCTTCCAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGAGGA 6014106 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || || || ||||| ||||| |||||||||||||| || || ||| || ||| ||| Sbjct 6014107 ATACCCTCTTTGTCTTGGATCTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCAACT 6014166 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || || || || || | ||||||||||| |||||||| Sbjct 6014167 TCAAGGGTGATAGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCAT 6014213 Score = 132 bits (146), Expect = 9e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| | ||||||||| | ||| || || ||||||||||| || || || || || Sbjct 6013759 CCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGAA 6013818 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| |||| || ||||| | |||||| || || || || || | |||||||| || || Sbjct 6013819 AGAGTTCTGCCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGA 6013878 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| || || || ||||| || || ||||| ||||| || || || || ||| ||| Sbjct 6013879 ATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGACT 6013938 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || || || || || | || || || || || |||||| Sbjct 6013939 TCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCATT 6013986 >seq71 Length=1082584 Score = 131 bits (144), Expect = 3e-25 Identities = 105/127 (83%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||| ||| ||||| |||||||| | ||||||||| ||||| ||||||||||| || Sbjct 572865 ACCGCCTCGCAAGCGCAGCACTAAGTGTAAAGTAGATTCCTTCTGGATATTATAATCCGA 572924 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | | |||| |||||||| | ||| || ||||||||||| | |||||| |||||||| || Sbjct 572925 CAAAGTTCTGCCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGCTGATCTGGTGG 572984 Query 82703 TATTCCT 82709 |||||| Sbjct 572985 AATTCCT 572991 >seq4 Length=9433735 Score = 100 bits (110), Expect = 6e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 |||| || || || ||||| || | | | | || || || || ||||| || || |||| Sbjct 6954754 CTTTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGA 6954695 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740 | |||| ||||||||||| || ||||| ||||| || || ||||| || || ||||| | Sbjct 6954694 TGAGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCT 6954635 Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800 | || |||||| | ||||| || | || || || || || || | || || || | Sbjct 6954634 CGATAGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTAAGGGTTTTCACGA 6954575 Query 82801 ATATCTGCAT 82810 | |||||||| Sbjct 6954574 AGATCTGCAT 6954565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981791524081404