Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3 91.5 1e-13 >seq3 Length=10655775 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||| || || || ||||||||||| || || | | | || || || Sbjct 2297997 AAATGGAGAGTGGATTCCTTTTGAATATTGTAATCAGACAAAGTACGTCCA-TCTTCCAG 2298055 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | || | |||||||| || || ||||||||||| || || ||| Sbjct 2298056 CTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCTTTATCCTGGAT 2298115 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||| || | | ||| | ||||| | | ||| || || | || | ||| || || Sbjct 2298116 CTTTGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCAACTTCAAGAGTTATGGTCTTCCC 2298175 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATGG 133662 ||||| || || |||||||||||||||| Sbjct 2298176 GGTCAATGTCTTCACGAAAATCTGCATGG 2298204 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || |||||||| ||||| || ||| | || | | | ||||| ||||||||||| Sbjct 2294666 GTAGATTCTTTCTGAATATTATAGTCGGATAAAGTCCGTCCA-TCCTCTAGCTGCTTGCC 2294724 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 |||| |||| || | || || |||||||| |||||||| || || || || ||| Sbjct 2294725 CGCGAAAATTAGTCTTTGTTGATCGGGAGGAATGCCTTCTTTATCTTGTATTTTCGCCTT 2294784 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| |||||| | | || || || | || | ||||| || || ||||| Sbjct 2294785 CACGTTTTCAATCGTGTCTGAAGCTTCGACCTCCAGCGTAATAGTTTTACCAGTGAGAGT 2294844 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| || ||||||||||| Sbjct 2294845 TTTGACAAAAATCTGCAT 2294862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483403662732640