Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq14 111 1e-19 seq3 100 2e-16 >seq14 Length=6127344 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||| | ||| | |||| ||| || ||| ||||| || |||||||| ||||| Sbjct 6013987 CCTCCTCGAAGACGCAGAACCAGATGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGAA 6014046 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | |||| ||||| ||||| || ||||| |||||||| ||||| || | || Sbjct 6014047 AGAGTTCTGCCGTCTTCCAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGAGGA 6014106 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| |||||||| || || ||| | ||| || | ||||| | ||| || Sbjct 6014107 ATACCCTCTTTGTCTTGGATCTTAGCTTTTA-CATTTTCTATTGTGTCAGAAGCTTCAAC 6014165 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| |||||||| || | || ||||||||||||||||| Sbjct 6014166 TTCAAGGGTGATAGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCAT 6014213 Score = 95.1 bits (104), Expect = 8e-15 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 ||||| || || || || ||| |||||||| ||||||||||| || || || | | Sbjct 6013543 CGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCCA 6013602 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || |||| |||||| ||||| ||||||| |||||| ||||| | || | || |||||| Sbjct 6013603 TCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTTG 6013662 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || |||||| | | || | || | |||||| | ||| || || | || || Sbjct 6013663 TCCTGAATTTT-GGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGACTTCGAGGGTAAT 6013721 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||||||| || | ||||| || || || ||||| Sbjct 6013722 GGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 6013757 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || |||||||| || || || || | | || || | ||| ||||| ||||| Sbjct 6014251 TCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTGCCATCCTCTAGTTGCTTTCCAGCAAAG 6014310 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||||||| || |||||| | || | ||||||||| || || || ||| | ||| Sbjct 6014311 ATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTATCTTGGATCTTAGCTTTGA-CATT 6014369 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | ||||| | |||||| |||| ||||| ||||| || || | |||||||| Sbjct 6014370 TTCGATAGTGTCAGAAGCTTCCACCTCAAGGGTGATGGTTTTTCCAGTGAGGGTTTTTAC 6014429 Query 33738 AAAGATCTGCAT 33749 |||||| ||||| Sbjct 6014430 AAAGATTTGCAT 6014441 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||| | ||| | |||| || || ||| ||||| || |||||||| ||||| Sbjct 6013759 CCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGAA 6013818 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | || ||||||||||| ||||| ||||||| |||||| ||||| | || Sbjct 6013819 AGAGTTCTGCCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGA 6013878 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| |||||| | | || | || | |||||| | ||| || Sbjct 6013879 ATTCCCTCTTTGTCCTGAATTTT-GGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGAC 6013937 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || |||||||| || | ||||| || || || ||||| Sbjct 6013938 TTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 6013985 >seq3 Length=10655775 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 ||||| || ||||| ||||| || || || || |||| || | ||||||||| ||||| Sbjct 2297784 TCTTTCTGAATGTTATAATCAGAAAGCGTACGGCCGTCTTCAAGTTGTTTTCCAGCAAAG 2297843 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 ||||| | |||||||||| | || | ||||||||||| |||||| | | |||| Sbjct 2297844 ATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCTTGAATTTT-GGCCTTGACATT 2297902 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | ||||| || || || || | || || || || ||||| | ||||| || Sbjct 2297903 TTCGATCGTGTCTGATGCCTCAACTTCCAATGTAATGGTCTTTCCTGTCAGGGTTTTGAC 2297962 Query 33738 AAAGATCTGCAT 33749 |||||||||||| Sbjct 2297963 AAAGATCTGCAT 2297974 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | ||| | | |||||||| |||||| || ||||| || |||||||| || Sbjct 2297976 CCACCACGCAATCTGAGGACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATCAGAC 2298035 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || ||| | || |||| || ||||| ||||| ||||||||||||||||| | || Sbjct 2298036 AAAGTACGTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTGGG 2298095 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||| || || || || || || | || | |||||| | || || Sbjct 2298096 ATGCCTTCTTTATCCTGGATCTT-TGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCAAC 2298154 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 |||| || || || || || || || || || || || |||||||| || Sbjct 2298155 TTCAAGAGTTATGGTCTTCCCGGTCAATGTCTTCACGAAAATCTGCATGGT 2298205 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | ||||| | |||||||| | || || || || || || || || || Sbjct 2297519 ACCACCACGTAAACGGAGAACCAAATGCAAGGTAGATTCCTTCTGAATATTATAGTCAGA 2297578 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || || | |||||||||||| || ||||| | ||||||||| | || Sbjct 2297579 AAGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGGGG 2297638 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||| |||||| | | |||| || | ||||| | || | Sbjct 2297639 GATTCCTTCTTTGTATTGAATTTT-GGCCTTGACATTCTCGATAGTGTCTGACGCCTCAA 2297697 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | |||||| || || ||||| | ||||| ||||| |||||||| Sbjct 2297698 TTTCCAACGTGATGGTCTTTCCTGTCAGGGTTTTGACAAAAATCTGCAT 2297746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328692638757120