Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq14 131 4e-25 seq3 129 1e-24 seq4 91.5 3e-13 >seq14 Length=6127344 Score = 131 bits (144), Expect = 4e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||| || || | ||||| ||| ||| ||||| ||||| Sbjct 6013970 AAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTCAGACACCATCGAAAAC 6013911 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| || ||||| || ||||| |||||| ||||| || | || || ||| Sbjct 6013910 GTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATCAACAGCGTCTGATTTTC 6013851 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || ||||||||||| || ||| | |||| |||||| | |||||||| || Sbjct 6013850 GCCGGCAAACAATTGGAAGATGGCAGAACTCTTTCCGACTACAACATTCAGAAAGAATCC 6013791 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 || |||||||| ||| || | |||||| Sbjct 6013790 ACGCTTCACCTGGTTCTGCGTCTTCGA 6013764 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || ||||| ||||| | ||||| ||| ||||||| Sbjct 6014210 CAGATCTTTGTAAAGACTCTTACGGGTAAAACTATCACCCTTGAAGTTGAAGCTTCTGAC 6014151 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | ||| ||||| ||||| ||||| ||||| || ||| || ||| ||| Sbjct 6014150 ACAATAGAAAATGTAAAAGCTAAGATCCAAGACAAAGAGGGTATTCCTCCTGACCAGCAA 6014091 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || || || ||||||||||| || || ||| | |||| |||||| | Sbjct 6014090 CGTTTGATCTTTGCTGGTAAACAGTTGGAAGACGGCAGAACTCTTTCCGACTACAACATT 6014031 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||||| || || ||||| || ||| || | |||||| Sbjct 6014030 CAGAAAGAATCCACGCTTCATCTGGTTCTGCGTCTTCGA 6013992 >seq3 Length=10655775 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| ||||| || ||||| || || |||| || ||| ||| ||| Sbjct 2294859 CAGATTTTTGTCAAAACTCTCACTGGTAAAACTATTACGCTGGAGGTCGAAGCTTCAGAC 2294800 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| || || ||||| |||||||| ||| || || ||| Sbjct 2294799 ACGATTGAAAACGTGAAGGCGAAAATACAAGATAAAGAAGGCATTCCTCCCGATCAACAA 2294740 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| || ||||| || |||||| | || |||||| ||||||| |||| || || | Sbjct 2294739 AGACTAATTTTCGCGGGCAAGCAGCTAGAGGATGGACGGACTTTATCCGACTATAATATT 2294680 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||||| ||||| ||||||||||| | ||||| || Sbjct 2294679 CAGAAAGAATCTACACTTCACCTTGTACTTCGACTTAGA 2294641 Score = 96.9 bits (106), Expect = 8e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 || ||||| | ||||||||||| ||||| |||||||| | ||||||||| | ||||| Sbjct 2294641 TCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTCTGAATATTATAGTCGGATAAAGT 2294700 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 || |||||| || |||||||| || ||||| || || | ||||||| Sbjct 2294701 CCGTCCATCCTCTAGCTGCTTGCCCGCGAAAATTAGTCTTTGTTGA 2294746 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| || |||||||| || ||||| |||||| | || || ||| Sbjct 2297743 CAGATTTTTGTCAAAACCCTGACAGGAAAGACCATCACGTTGGAAATTGAGGCGTCAGAC 2297684 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| || |||||| | ||||||||||| ||||| || Sbjct 2297683 ACTATCGAGAATGTCAAGGCCAAAATTCAATACAAAGAAGGAATCCCCCCGGATCAGCAG 2297624 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | |||||||||||||| || | |||||||| | || | | || || || | Sbjct 2297623 AGATTGATCTTCGCCGGAAAACAACTTGAAGATGGTCGCACACTTTCTGACTATAATATT 2297564 Query 206353 CAGAAAGAGTCTAC 206366 ||||| || ||||| Sbjct 2297563 CAGAAGGAATCTAC 2297550 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| || |||||||| || || || |||||||| || || ||| Sbjct 2297971 CAGATCTTTGTCAAAACCCTGACAGGAAAGACCATTACATTGGAAGTTGAGGCATCAGAC 2297912 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| || ||| || |||||||| ||||||||||| || || || Sbjct 2297911 ACGATCGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCCCCAGATCAGCAG 2297852 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | ||||| || ||||| || | ||||| || | || | | ||||| ||| | Sbjct 2297851 AGATTGATCTTTGCTGGAAAACAACTTGAAGACGGCCGTACGCTTTCTGATTATAACATT 2297792 Query 206353 CAGAAAGAGTCTAC 206366 |||||||| || || Sbjct 2297791 CAGAAAGAATCCAC 2297778 Score = 84.2 bits (92), Expect = 5e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || || ||| | ||||| || ||||||||| |||| ||||| | Sbjct 2298178 ACCGGGAAGACCATAACTCTTGAAGTTGAGGCTTCTGACACCATCGAGAACGTAAAAGCA 2298119 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || |||||||| || || || || | | ||||| || |||||| Sbjct 2298118 AAGATCCAGGATAAAGAAGGCATCCCACCTGATCAGCAGCGTTTGATCTTTGCTGGAAAG 2298059 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 ||| ||||||||||| | |||||| | |||||||| | || || || || ||||| || Sbjct 2298058 CAGCTGGAAGATGGACGTACTTTGTCTGATTACAATATTCAAAAGGAATCCACTCTCCA 2298000 >seq4 Length=9433735 Score = 91.5 bits (100), Expect = 3e-13 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| || || | || || || ||||| || |||| Sbjct 6954580 AAAACCCTTACGGGTAAAACCATTACCCTCGAGGTAGAGGCCTCTGATACTATCGAGAAT 6954639 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || |||||| ||| || || |||| |||||| Sbjct 6954640 GTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCGCCAGATCAACAGCGACTCATCTTC 6954699 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAG 206359 ||||| || ||| |||| |||||| | |||||| ||||||||||| |||| |||| Sbjct 6954700 GCCGGCAAACAGCTGGAGGATGGACGCACTTTGTCCGATTACAACATCCAAAAAG 6954754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181777857063956