Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq14 95.1 1e-14 seq3 91.5 1e-13 seq4 87.8 2e-12 >seq14 Length=6127344 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| || | | || ||||| ||||||||||||||| | || | | Sbjct 6013771 CGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGAAAGAGTTCTGCCA 6013830 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | ||||| |||| | || |||||||||||||| || || || || ||||| Sbjct 6013831 TCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTTG 6013890 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| || | | ||| | || || | | || ||||||| || | Sbjct 6013891 TCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGACTTCGAGGGTAATG 6013950 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||| |||||||| | |||||| ||||| Sbjct 6013951 GTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 6013985 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || ||||| || || | | || |||||||| |||||||| || | || | | Sbjct 6013543 CGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCCA 6013602 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || ||||| |||| | || |||||||||||||| || || || || ||||| Sbjct 6013603 TCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTTG 6013662 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| || | | ||| | || || | | || ||||||| || | Sbjct 6013663 TCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGACTTCGAGGGTAATG 6013722 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||| |||||||| | |||||| ||||| Sbjct 6013723 GTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 6013757 >seq3 Length=10655775 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| | | |||||||| | | || || |||||||| ||||| || || || Sbjct 2297981 ACGCAATCTGAGGACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATCAGACAAAGT 2298040 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| |||||| ||||| || || | | |||| | |||||| ||||| || || ||||| Sbjct 2298041 ACGTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTGGGATGCC 2298100 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||||||||| || ||| ||| | | || | || || | | ||| ||||| | Sbjct 2298101 TTCTTTATCCTGGATCTTTGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCAACTTCAAG 2298160 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || || |||| || || | ||||||||||||| Sbjct 2298161 AGTTATGGTCTTCCCGGTCAATGTCTTCACGAAAATCTGCATG 2298203 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||| ||||| || |||||| | || || ||| || ||||| || || | Sbjct 2294669 GATTCTTTCTGAATATTATAGTCGGATAAAGTCCGTCCATCCTCTAGCTGCTTGCCCGCG 2294728 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | ||||| | |||||||| ||||| |||||||||||||| ||||| |||| Sbjct 2294729 AAAATTAGTCTTTGTTGATCGGGAGGAATGCCTTCTTTATCTTGTATTTTCGCCTTCACG 2294788 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | || || | | || || || | ||| | ||||||||||| |||||||| Sbjct 2294789 TTTTCAATCGTGTCTGAAGCTTCGACCTCCAGCGTAATAGTTTTACCAGTGAGAGTTTTG 2294848 Query 132110 ATGAAAATCTGCAT 132123 | ||||||||||| Sbjct 2294849 ACAAAAATCTGCAT 2294862 >seq4 Length=9433735 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993 ||||||| |||||||| ||| || || || ||| || |||||||| |||| ||| Sbjct 6954754 CTTTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGA 6954695 Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053 | || |||||||||||||| || || || || || || || || || | | | Sbjct 6954694 TGAGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCT 6954635 Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113 | | |||||| | | ||| || |||| || | |||||||| || || ||||| | || Sbjct 6954634 CGATAGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTAAGGGTTTTCACGA 6954575 Query 132114 AAATCTGCATG 132124 | ||||||||| Sbjct 6954574 AGATCTGCATG 6954564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476594304132960