Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq14 125 6e-24 seq3 91.5 1e-13 seq4 84.2 2e-11 seq54 82.4 7e-11 >seq14 Length=6127344 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | || || ||| | || || ||||||||||||| Sbjct 6013757 ATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTCA 6013698 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | ||||| |||||| || |||||||| || || || ||||| Sbjct 6013697 GACACCATCGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATCAA 6013638 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | || |||| || |||||||||||| ||||||| |||| | | |||||||| Sbjct 6013637 CAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACAAC 6013578 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || |||||||||||||| | || ||||| ||| || | | ||||| Sbjct 6013577 ATCCAAAAAGAATCCACACTCCACTTAGTTTTACGACTTCGTGGAGG 6013531 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | || || ||| | || || ||||||||||||| Sbjct 6013985 ATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTCA 6013926 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | ||||| |||||| || |||||||| || || || ||||| Sbjct 6013925 GACACCATCGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATCAA 6013866 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | || |||| || |||||||||| | ||||||| |||| | | ||| ||||| Sbjct 6013865 CAGCGTCTGATTTTCGCCGGCAAACAATTGGAAGATGGCAGAACTCTTTCCGACTACAAC 6013806 Query 25355 ATTCAAAAAGAATCCACCATTCA 25377 ||||| ||||||||||| |||| Sbjct 6013805 ATTCAGAAAGAATCCACGCTTCA 6013783 Score = 89.7 bits (98), Expect = 5e-13 Identities = 166/242 (69%), Gaps = 5/242 (2%) Strand=Plus/Minus Query 25142 TAAAATTATATAAGTAGTTT-TCAATTAAA----CAACATGCAAGTGTTTGTAAAAACAT 25196 ||| |||||||| | |||| | | ||| | || ||||||| | ||||||||||| Sbjct 6014479 TAATATTATATATATTGTTTGTTATTTACAGATTCATCATGCAAATCTTTGTAAAAACCC 6014420 Query 25197 TAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAAC 25256 | || |||||| | ||||| | || || ||||| || |||||||| | || ||| Sbjct 6014419 TCACTGGAAAAACCATCACCCTTGAGGTGGAAGCTTCTGACACTATCGAAAATGTCAAAG 6014360 Query 25257 AAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCA 25316 || || |||||||| ||||| || || ||||| ||| | | || | | || | Sbjct 6014359 CTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAACAACGTTTGATCTTTGCTGGAA 6014300 Query 25317 AACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTC 25376 | ||||| || |||| |||| | | || ||||| ||||| || ||||| || ||| Sbjct 6014299 AGCAACTAGAGGATGGCAGAACTCTTTCTGACTACAACATTCAGAAGGAATCTACGCTTC 6014240 Query 25377 AT 25378 || Sbjct 6014239 AT 6014238 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | |||||||| || | || || ||| | ||||| | ||||| ||||| Sbjct 6014214 CATGCAGATCTTTGTAAAGACTCTTACGGGTAAAACTATCACCCTTGAAGTTGAAGCTTC 6014155 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | |||||| || || || ||||||||||| || || || || Sbjct 6014154 TGACACAATAGAAAATGTAAAAGCTAAGATCCAAGACAAAGAGGGTATTCCTCCTGACCA 6014095 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||| | | || | | || ||||| | ||||| | |||| | | ||| ||||| Sbjct 6014094 GCAACGTTTGATCTTTGCTGGTAAACAGTTGGAAGACGGCAGAACTCTTTCCGACTACAA 6014035 Query 25354 TATTCAAAAAGAATCCACCATTCAT 25378 ||||| ||||||||||| ||||| Sbjct 6014034 CATTCAGAAAGAATCCACGCTTCAT 6014010 >seq3 Length=10655775 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 || |||||| | || || || ||||| ||||| || | || || | ||||| || || Sbjct 2298206 CACCATGCAGATTTTCGTGAAGACATTGACCGGGAAGACCATAACTCTTGAAGTTGAGGC 2298147 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 || || |||||| | |||||| ||| || |||||||| || || || || || Sbjct 2298146 TTCTGACACCATCGAGAACGTAAAAGCAAAGATCCAGGATAAAGAAGGCATCCCACCTGA 2298087 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 |||||| | | || | | || || || || ||||||| | | | | ||||| Sbjct 2298086 TCAGCAGCGTTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGACGTACTTTGTCTGATTA 2298027 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 |||||||||||| |||||||| | ||||| || | |||||| | || |||| Sbjct 2298026 CAATATTCAAAAGGAATCCACTCTCCATTTGGTCCTCAGATTGCGTGGTGGAA 2297974 >seq4 Length=9433735 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 || |||||| | || || ||||| | || || ||| | || || |||| || || || Sbjct 6954561 CACCATGCAGATCTTCGTGAAAACCCTTACGGGTAAAACCATTACCCTCGAGGTAGAGGC 6954620 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | |||||||||||| | || || || || || || ||||| || ||||| || Sbjct 6954621 CTCTGATACTATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCGCCAGA 6954680 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 ||| || ||||||| | || ||||||||| || || |||| | | | | |||||| Sbjct 6954681 TCAACAGCGACTCATCTTCGCCGGCAAACAGCTGGAGGATGGACGCACTTTGTCCGATTA 6954740 Query 25351 CAATATTCAAAAAG 25364 ||| || ||||||| Sbjct 6954741 CAACATCCAAAAAG 6954754 >seq54 Length=1719504 Score = 82.4 bits (90), Expect = 7e-11 Identities = 221/329 (67%), Gaps = 17/329 (5%) Strand=Plus/Minus Query 137390 TACCGATAGGTCTGTGTTTAAAATTTGATATTTGAG---CGCTAACAAGCGGATAAAAGT 137446 |||| |||||||||||| || ||| ||| ||| | | | | | |||||||||| Sbjct 1012035 TACCAATAGGTCTGTGTCTACGATTAGATGTTTTCGTTTCTTTGATA---GGATAAAAGT 1011979 Query 137447 TTGCGTCTATAATTCTATTGAGATTGTTAGTAACGACTCTGGACACTTTGTAGAGCAATT 137506 | | || || | | ||| ||||| ||| |||| | | | ||| | | || | Sbjct 1011978 TAACATCGATGACTTTATCTAGATTACGAGTGACGATTTTCGCGACTGTTTTAAGTTTAT 1011919 Query 137507 CGAAATCGAAGCTTTTAGACTGTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGT 137566 |||||||||| |||||| || | ||| | || | ||||| || ||||| ||||| | Sbjct 1011918 CGAAATCGAAAGTTTTAG--TG-TCATTAACGAACATGTTGACAGCGATAGATGCTAAAT 1011862 Query 137567 TGCATACGGCCGTTTCTGTATTGTCGCTGTATTGTACAATTTCGGCGCAAAGATTGCTG- 137625 ||||||| || |||| | | ||||| | |||||| | ||| | |||||| Sbjct 1011861 TGCATACAGCGACTTCTCCAGGACCCGAGTATTCAATAATTTCAGTGCACAAGTTGCTGC 1011802 Query 137626 -TTTCGGATCACT-CCCAAATTCTTTTGATT-GTTTTTCTCGTTGACGTGATCTTTATAT 137682 ||| | || | || | || || ||||| | ||||| |||| |||||||| || Sbjct 1011801 ATTT---AACAGTGCCTATATGCTGATGATTCGATTTTC-GGTTGCAATGATCTTTGTAA 1011746 Query 137683 ATCATATACGGAGTTCCGGTTTCGACTTG 137711 | |||||| || ||||| ||||| ||||| Sbjct 1011745 AGCATATAAGGTGTTCCAGTTTCTACTTG 1011717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445078621403520