Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq14 107 2e-18 seq3 105 6e-18 seq4 91.5 1e-13 >seq14 Length=6127344 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||| ||| | ||| || || ||||||||||| |||| | |||| |||| ||| Sbjct 6014005 ACCAGATGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGAAAGAGTTCTGCCGTCTTCC 6014064 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 | ||| ||||| ||||| ||||| || |||||||| | ||||| | ||| ||||| | Sbjct 6014065 AACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGAGGAATACCCTCTTTGTCTTGG 6014124 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 ||||| || | | || | | ||||| | ||| || || | ||||| |||||| Sbjct 6014125 ATCTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCAACTTCAAGGGTGATAGTTTTA 6014184 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | ||| || ||||| |||||||| Sbjct 6014185 CCCGTAAGAGTCTTTACAAAGATCTGCAT 6014213 >seq3 Length=10655775 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| || || | |||||||| | || ||||||||||| |||||||| | Sbjct 2297974 TTCCACCACGCAATCTGAGGACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATCAG 2298033 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||| || || | || ||||||||||| || ||||| ||||| |||||||| || | | Sbjct 2298034 ACAAAGTACGTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTG 2298093 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT-GCCACCGTGTCGCTCGATTCC 35686 | | || || || ||| |||| ||||||| ||| | | ||||| | || Sbjct 2298094 GGATGCCTTCTTTATCCTGGATC-TTTGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCA 2298152 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || | || || || || || ||||| || ||||| || |||||||| Sbjct 2298153 ACTTCAAGAGTTATGGTCTTCCCGGTCAATGTCTTCACGAAAATCTGCAT 2298202 >seq4 Length=9433735 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 35549 TTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATC 35608 ||||| ||||||||||||| ||| || || | || |||||||| || || || || || Sbjct 6954752 TTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGATG 6954693 Query 35609 AACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCC 35668 | ||||| || || | |||| | |||||||||| |||||| ||| | | | | Sbjct 6954692 AGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCG 6954633 Query 35669 ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAAT 35728 | || || | || ||||| | || || ||||||||||| | |||||||| || Sbjct 6954632 ATAGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTAAGGGTTTTCACGAAG 6954573 Query 35729 ATCTGCAT 35736 |||||||| Sbjct 6954572 ATCTGCAT 6954565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450777619366880