Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq14 161 1e-34 seq3 127 2e-24 seq4 87.8 2e-12 seq54 84.2 2e-11 >seq14 Length=6127344 Score = 161 bits (178), Expect = 1e-34 Identities = 176/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||| || |||| || ||||| ||||||||||| || ||||||||||||||| Sbjct 6013757 TTCCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGG 6013816 Query 134545 CAACGGTG-TGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 || || || | || || | |||||||| || ||||||| |||||| ||||| || Sbjct 6013817 AAAGAGTTCTGCCA-TCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGT 6013875 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || || ||||| || |||||||| || || || | ||||| || | ||| Sbjct 6013876 GGAATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCG 6013935 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || ||||| |||||||||||||| || | |||||| ||||||||||||||| Sbjct 6013936 ACTTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCATT 6013986 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||||| || || | ||| || |||||||| ||||| |||||||| || | Sbjct 6013531 CCTCCACGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAA 6013590 Query 134547 ACGGTG-TGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | || || | || || || |||||||| || ||||||| |||||| ||||| || || Sbjct 6013591 AGAGTTCTGCCA-TCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGG 6013649 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || || ||||| || |||||||| || || || | ||||| || | ||| || Sbjct 6013650 AATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGAC 6013709 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||||| |||||||||||||| || | |||||| ||||||||||||||| Sbjct 6013710 TTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCATT 6013758 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||||| || |||| || || || ||||||||||| || ||||||||||||||| Sbjct 6013985 TTCCTCCTCGAAGACGCAGAACCAGATGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGG 6014044 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 || || ||| || | |||||| || ||||| |||||||| ||||| || || | Sbjct 6014045 AAAGAGTTCTGCCGTCTTCCAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGAG 6014104 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || ||||| ||||| || || ||| || || | |||||| || | ||| | Sbjct 6014105 GAATACCCTCTTTGTCTTGGATCTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCAA 6014164 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || || || |||||||| || | ||| || || || || ||||| Sbjct 6014165 CTTCAAGGGTGATAGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCAT 6014213 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||| | || |||| || || || ||||| |||||||| |||||||||||||| | Sbjct 6014215 CCTCCACGAAGACGCAGAACAAGATGAAGCGTAGATTCCTTCTGAATGTTGTAGTCAGAA 6014274 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | | | || | || || || || || || ||||| |||||||| || ||||| || || Sbjct 6014275 AGAGTTCTGCCA-TCCTCTAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGAGG 6014333 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| ||||| || || |||||| || | ||||| || | |||||| Sbjct 6014334 AATACCTTCTTTATCTTGGATCTTAGCTTTGACATTTTCGATAGTGTCAGAAGCTTCCAC 6014393 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || |||||||| || || | ||||| || || |||||||| Sbjct 6014394 CTCAAGGGTGATGGTTTTTCCAGTGAGGGTTTTTACAAAGATTTGCAT 6014441 >seq3 Length=10655775 Score = 127 bits (140), Expect = 2e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTG 134569 || || ||||||||||||||||| ||||| || | ||| | | | || || ||||| Sbjct 2298000 TGGAGAGTGGATTCCTTTTGAATATTGTAATCAGACAAAG-TACGTCCATCTTCCAGCTG 2298058 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || ||||| ||||||||||||||||| || || ||||||||||| || || || || Sbjct 2298059 CTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCTTTATCCTGGATCTT 2298118 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 | ||| || || | ||||| || | || || || ||||| ||||| || ||||| Sbjct 2298119 TGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCAACTTCAAGAGTTATGGTCTTCCCGGT 2298178 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 || || || |||||||| ||||| Sbjct 2298179 CAATGTCTTCACGAAAATCTGCAT 2298202 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 ||| ||||| ||||| | || ||||| || || ||||| || ||||| || |||||| Sbjct 2294635 TCCGCCTCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTCTGAATATTATAGTCGGA 2294694 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | || | || || ||||| ||||| || ||||| | | || |||||||| || Sbjct 2294695 TAAAGTCCGTCCATCCTCTAGCTGCTTGCCCGCGAAAATTAGTCTTTGTTGATCGGGAGG 2294754 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAAT-GTGTCGGACGATTCCA 134664 ||||||||||| ||||| ||||| || | || | |||| ||||| || | ||| | Sbjct 2294755 AATGCCTTCTTTATCTTGTATTTTCGCCTTCA-CGTTTTCAATCGTGTCTGAAGCTTCGA 2294813 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || ||||| |||||||| || | |||||| || ||||| ||||| Sbjct 2294814 CCTCCAGCGTAATAGTTTTACCAGTGAGAGTTTTGACAAAAATCTGCAT 2294862 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 |||||||| || |||||||| || || || || | ||| || || ||||| || Sbjct 2297778 GTGGATTCTTTCTGAATGTTATAATCAGAAAGCGTACGGCCGTCTTCAAGTTGTTTTCCA 2297837 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 ||||| ||||| | ||||||||| || || || |||||||| ||||||||||| ||| Sbjct 2297838 GCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCTTGAATTTTGGCCTTG 2297897 Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 || || | ||||| || | || || || | |||||||| || || || | ||| Sbjct 2297898 ACATTTTCGATCGTGTCTGATGCCTCAACTTCCAATGTAATGGTCTTTCCTGTCAGGGTT 2297957 Query 134697 TTAACGAAAATTTGCATT 134714 || || || || |||||| Sbjct 2297958 TTGACAAAGATCTGCATT 2297975 >seq4 Length=9433735 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 134526 TTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATC 134585 ||||| |||||||| ||| | ||| | || || ||||||||||| || || || Sbjct 6954752 TTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGATG 6954693 Query 134586 AAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCC 134645 | ||||| ||||| ||||| || || || || || || || || ||||| || Sbjct 6954692 AGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCG 6954633 Query 134646 AATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAA 134705 | || || || | || || ||||| |||||||||||||| || | ||||| ||||| Sbjct 6954632 ATAGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTAAGGGTTTTCACGAAG 6954573 Query 134706 ATTTGCAT 134713 || ||||| Sbjct 6954572 ATCTGCAT 6954565 >seq54 Length=1719504 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 8761 CAATACGACATGTGGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGC 8820 ||||| || |||||||| || | || || ||| ||| ||||| || |||||| Sbjct 1012368 CAATATGATATGTGGAACGTTAAACCGACAAATTTATGGGATTGGGATGAATTGAAAGCG 1012427 Query 8821 AAAATTGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACG 8880 || || || || ||| | | ||||| || || | || ||||| || ||| || Sbjct 1012428 AAGATCGCGAAACACGGAGTAAGAAATTCTCTTTTAATAGCACCTATGCCAACGGCCTCG 1012487 Query 8881 ACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTG 8940 || || || || | ||||||||||||||| |||| |||| || | ||| | || ||| Sbjct 1012488 ACGGCACAGATTTTAGGAAACAACGAATCCATTGAACCGTATACAAGCAATATATATGTG 1012547 Query 8941 AGACGAGTGTTGGCCGGCGATTTTTTAATGCTGAATCGTCATTTGATGCGCGACTT 8996 || || || ||| | || || ||| | || | |||| ||||| |||| || || Sbjct 1012548 AGGCGCGTATTGTCTGGAGAATTTATCATTGTCAATCCACATTTACTGCGAGATTT 1012603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505380483626720