Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq30 102 1e-16 seq54 100 4e-16 seq73 96.9 5e-15 >seq30 Length=3857846 Score = 102 bits (112), Expect = 1e-16 Identities = 158/223 (71%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 39422 TTTTTAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATC 39481 |||| |||||||||| | | ||||| |||||||||||||| ||||| | ||| Sbjct 1771673 TTTTCAAATCCTAATGCAACGAATAATCTGTCTGCAACAAATTCGATGTAATTACACATG 1771732 Query 39482 ATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCG 39541 | | | |||||||||||| |||| ||| || | || | ||| | ||| || ||||| Sbjct 1771733 AATGTGCGATTCATTCCTATTAGTTCAACCGGCAATGCTTGCGTCAAAAATTCCTTTTCA 1771792 Query 39542 ATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGG---ATGCAAT 39598 || |||||||| || ||| || ||| | || || ||| || ||| || | Sbjct 1771793 ATTTCTACGGCGTCCATTACAATTGATTTCAC-AC--GCTCAAACGATGGCTTTTGTACG 1771849 Query 39599 AAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCT 39641 | |||||||||||||| |||||||| || ||||||| |||| Sbjct 1771850 ATGTGTTTAAACATTAAACAGGCGAAATCGCAATGTAATCCCT 1771892 Score = 100 bits (110), Expect = 4e-16 Identities = 142/199 (71%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 39908 TACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 39967 ||||| || ||||| || ||||| || || || ||||| || || ||||| | |||||| Sbjct 1773245 TACATCTCAGAATGAATATTTTCTATGGCAATTTGAAAGCCATAGAAACAACGTGCTTCG 1773304 Query 39968 GTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTA 40027 | ||||| || ||| | ||||| || | ||| ||||| || || ||||| | Sbjct 1773305 GAAATTTTCACTTCTTGGCTGAATCTCTCAATTAGATTCTCATTAACGATACCATCGGAA 1773364 Query 40028 GCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTT---A 40084 |||||||||||||| || ||||| |||||| ||| ||||||| | | ||| | Sbjct 1773365 GCGGCAAAAAATGCTAAAACATGAGAGATAAAACGTTTCTCATCGGAATTTAGTTTTTCA 1773424 Query 40085 TTCCAGTCATTGATATCTT 40103 |||||||| || | |||| Sbjct 1773425 TTCCAGTCCTTCTTGTCTT 1773443 >seq54 Length=1719504 Score = 100 bits (110), Expect = 4e-16 Identities = 184/268 (69%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 69970 CTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAAC 70029 || ||||| || |||| |||| | |||||||||| || || || || || || || Sbjct 1010903 CTGGACATCTGCTGATTATTAGTACAAGCATTAAATAGAGTTGGTGAAGCATGTGTAAAA 1010844 Query 70030 CATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATT 70089 || ||| || | ||| |||||||| || || || || || | |||||| Sbjct 1010843 TATCGTTCGGACAAATAATTATATGTTTCTATGACTTTATCAATGTCATTTTCATGAATA 1010784 Query 70090 CCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTC 70149 || | || || | |||||||||||| ||||| | || || | ||| ||| |||||| Sbjct 1010783 CCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCATTGATTTTC 1010724 Query 70150 AACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTA--TGAAAAGTCTCTTT 70207 | |||||| | | || || |||||||| |||| ||| || || ||||| || | | Sbjct 1010723 AGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAA--TCACGAT 1010666 Query 70208 CGTAAATAATAACAGAATTTAGTTTATC 70235 |||| || ||| |||||| ||||| || Sbjct 1010665 CGTATATTATAGCAGAATCCAGTTTCTC 1010638 Score = 100 bits (110), Expect = 4e-16 Identities = 169/245 (69%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 68686 GTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGA 68745 |||||| ||| || | ||| ||||| || || |||||| ||||| || || | | Sbjct 1012606 GTTAAATCTCGCAGTAAATGTGGATTGACAATGATAAATTCTCCAGACAATACGCGCCTC 1012547 Query 68746 GTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTT 68805 || ||||| || ||||| ||||| | ||||| || ||||| | ||| || || || Sbjct 1012546 ACATATATATTGCTTGTATACGGTTCAATGGATTCGTTGTTTCCTAAAATCTGTGCCGTC 1012487 Query 68806 GATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTA 68865 || || |||||||||||||| | || | | |||||| | || ||| | ||| || Sbjct 1012486 GAGGCCGTTGGCATAGGTGCTATTAAAAGAGAATTTCTTACTCCGTGTTTCGCGATCTTC 1012427 Query 68866 TCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGT 68925 |||| | | | ||||||||| | || | ||| ||| ||||| | ||| ||||| Sbjct 1012426 GCTTTCAATTCATCCCAATCCCATAAATTTGTCGGTTTAACGTTCCACATATCATATTGA 1012367 Query 68926 AGAAT 68930 ||||| Sbjct 1012366 AGAAT 1012362 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 69520 AATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCAC 69579 ||||||||||||||||||||| || |||||| |||||| ||||||||| | |||| Sbjct 1011532 AATTCATCTCCCCAAACATCAGATAAGCCAGGAGATTCATGTGGACACATTAGGCTCCAC 1011473 Query 69580 ACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGA 69627 | || |||| | || |||| |||||| ||||| || ||||| ||| Sbjct 1011472 ATCTCGTCATTATATACACGTTCCATAAAAAGATCTGGTATCCATAGA 1011425 >seq73 Length=1005568 Score = 96.9 bits (106), Expect = 5e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 69516 TTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGA 69575 ||| |||||||| |||||| | ||| |||||||||||||||| ||||||||| || Sbjct 746117 TTCAAATTCATCACCCCAAGCTTCAATTAATCCAGGACATTCATGTGGACACATTAAACT 746058 Query 69576 CCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCA 69623 ||| ||||||||||| ||| |||||||| |||| || ||| |||| Sbjct 746057 CCATACATCATCATCAAAAACACGTTTCATGAATAAATTTGGAGTCCA 746010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686884449083040