Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq30 113 4e-20 seq32 105 5e-18 >seq30 Length=3857846 Score = 113 bits (124), Expect = 4e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888 || |||| |||||| ||| ||||| || |||||||| || ||| || || || ||| Sbjct 1773405 GAGAAACGTTTTATCTCTCATGTTTTAGCATTTTTTGCCGCTTCCGATGGTATCGTTAAT 1773346 Query 43889 GAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTAT 43948 || ||| | || | || |||||||| || | | |||||||| ||||| ||| Sbjct 1773345 GAGAATCTAATTGAGAGATTCAGCCAAGAAGTGAAAATTTCCGAAGCACGTTGTTTCTAT 1773286 Query 43949 GGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACG 44008 || ||||||||||||||||||||||||||||| || |||||| | | || || || || Sbjct 1773285 GGCTTTCAAATTGCCATAGAAAATATTCATTCTGAGATGTACTCTTTGCTCATTGAAACT 1773226 Query 44009 TACAT 44013 || || Sbjct 1773225 TATAT 1773221 >seq32 Length=3726508 Score = 105 bits (116), Expect = 5e-18 Identities = 197/288 (68%), Gaps = 6/288 (2%) Strand=Plus/Minus Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302 ||||| || ||| ||| |||||| | || || || ||||| |||| || |||||| Sbjct 737045 ATTGGTGGCTTGGATAAGGAGTTTAGCGCCATTTTCCGAAGAGCCTTTGCATCCCGTGTT 736986 Query 19303 TTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTAT 19362 || | | || | ||| |||||||| || || ||||| ||| | ||| | ||| Sbjct 736985 TTCCCAACGGAGATTGTTACTCAATTGGGTTGCAAGCATGTAAAAGGAATCTTGTTATAT 736926 Query 19363 GGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAA---TTACTTACA 19419 || ||||| ||| ||||| || ||||| || | || | ||| | ||| | || Sbjct 736925 GGTCCACCTGGTACAGGAAAGACGTTAATGGCTCGGCAAATAGGTACAATGTTAAATGCA 736866 Query 19420 AAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCG 19479 | | |||| |||||||||||||| || |||| || |||||||||| || || Sbjct 736865 AGAGAACCG---AAAATTGTAAATGGCCCACAAATTTTGGATAAATATGTTGGAGAAAGC 736809 Query 19480 GAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAA 19527 || | ||| | || | ||||| ||||| || ||||||||| ||||| Sbjct 736808 GAGGCTAATATCAGAAGATTGTTCGCTGAAGCAGAAGAAGAAGAAAAA 736761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397442262430180