Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3 109 3e-19 >seq3 Length=10655775 Score = 109 bits (120), Expect = 3e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||| | ||| |||||||| | ||| || || ||||| || || || ||| Sbjct 2294864 CCGCCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAGAA 2294923 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || |||||||||||||||| ||||| || || || | |||||||||||| || Sbjct 2294924 AGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGTTGGTCCGGTGGG 2294983 Query 34600 ACTCCCTCCTTGTCT 34614 | ||| ||||||||| Sbjct 2294984 ATTCCTTCCTTGTCT 2294998 Score = 109 bits (120), Expect = 3e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||||||||||||| ||||||||||| || ||||| || | || || | ||||| Sbjct 2297994 ACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATCAGACAAAGTACGTCCATCTTCC 2298053 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 || || || || ||||| || |||||||| || || || || | || || || || | Sbjct 2298054 AGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCTTTATCCTGG 2298113 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 ||| |||| ||| ||| | || ||||| ||| ||||| | ||||| || || Sbjct 2298114 ATC-TTTGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCAACTTCAAGAGTTATGGTCTT 2298172 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 ||||| || || ||||| |||||||||||| || Sbjct 2298173 CCCGGTCAATGTCTTCACGAAAATCTGCATGGTG 2298206 Score = 100 bits (110), Expect = 2e-16 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||| | || ||||| ||||| ||||| || |||||||| || | |||||| Sbjct 2297538 ACCAAATGCAAGGTAGATTCCTTCTGAATATTATAGTCAGAAAGTGTGCGACCATCTTCA 2297597 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 |||||||| ||||| || || || | ||| || ||||| || | ||| || |||| | || Sbjct 2297598 AGTTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGGGGGATTCCTTCTTTGTAT-TG 2297656 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCT-TCGCTCTCCACTTCCACGGTTATCGTTT 34675 | ||| | || || | || |||||| ||| ||| | ||||| || || || | Sbjct 2297657 AATTTTGGCCTTGACATTCTCGATAGTGTCTGACGC-CTCAATTTCCAACGTGATGGTCT 2297715 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || | ||||| |||||||||||||| Sbjct 2297716 TTCCTGTCAGGGTTTTGACAAAAATCTGCAT 2297746 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || || |||||||||||||| ||||| || || |||||||||||||||| || ||||| Sbjct 2297784 TCTTTCTGAATGTTATAATCAGAAAGCGTACGGCCGTCTTCAAGTTGTTTTCCAGCAAAG 2297843 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GA 34634 || || | ||| || || || || | ||| || |||||| ||| ||| | || || Sbjct 2297844 ATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCT-TGAATTTTGGCCTTGACATT 2297902 Query 34635 TAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 | || |||||| ||| ||||||| || || || || || || | ||||| || Sbjct 2297903 TTCGATCGTGTCTGATGCCTCAACTTCCAATGTAATGGTCTTTCCTGTCAGGGTTTTGAC 2297962 Query 34695 AAAAATCTGCAT 34706 ||| |||||||| Sbjct 2297963 AAAGATCTGCAT 2297974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314718721764788