Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq14 145 7e-30 seq3 140 3e-28 seq4 95.1 1e-14 seq37 84.2 2e-11 >seq14 Length=6127344 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||||| || || || | ||||| || ||||| ||| | || Sbjct 6013985 ATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTCA 6013926 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || |||||||| |||||||| || || ||||| |||||| Sbjct 6013925 GACACCATCGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATCAA 6013866 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||||||||||||||| | || ||||||| |||||| Sbjct 6013865 CAGCGTCTGATTTTCGCCGGCAAACAATTGGAAGATGGCAGAACTCTTTCCGACTACAAC 6013806 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || || || || | || ||||| ||||| | || || || || Sbjct 6013805 ATTCAGAAAGAATCCACGCTTCACCTGGTTCTGCGTCTTCGAGGAGGAAT 6013756 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| |||||||| ||||| || || || |||| || |||||||| ||| | || Sbjct 6014214 CATGCAGATCTTTGTAAAGACTCTTACGGGTAAAACTATCACCCTTGAAGTTGAAGCTTC 6014155 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | || ||| || || ||||||||||| || || || || || || Sbjct 6014154 TGACACAATAGAAAATGTAAAAGCTAAGATCCAAGACAAAGAGGGTATTCCTCCTGACCA 6014095 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || ||||| || | || || ||||| ||||||||| | || ||||||| ||||| Sbjct 6014094 GCAACGTTTGATCTTTGCTGGTAAACAGTTGGAAGACGGCAGAACTCTTTCCGACTACAA 6014035 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || || || || | ||| ||||| ||||| | || || || || Sbjct 6014034 CATTCAGAAAGAATCCACGCTTCATCTGGTTCTGCGTCTTCGAGGAGGAAT 6013984 Score = 136 bits (150), Expect = 3e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||||| || || || | ||||| || ||||| ||| | || Sbjct 6013757 ATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTCA 6013698 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || |||||||| |||||||| || || ||||| |||||| Sbjct 6013697 GACACCATCGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATCAA 6013638 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||||||| ||||||| | || |||| ||||||||| Sbjct 6013637 CAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACAAC 6013578 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 || ||||| || || || | || || ||||| || Sbjct 6013577 ATCCAAAAAGAATCCACACTCCACTTAGTTTTACG 6013543 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||||||||| || || || || | || || ||||| |||||| | || Sbjct 6014442 CATGCAAATCTTTGTAAAAACCCTCACTGGAAAAACCATCACCCTTGAGGTGGAAGCTTC 6014383 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || || | |||||| || || ||||| |||||||| || || || ||||| Sbjct 6014382 TGACACTATCGAAAATGTCAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCA 6014323 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| ||||| || | || || || ||| | || || | || |||| || ||||| Sbjct 6014322 ACAACGTTTGATCTTTGCTGGAAAGCAACTAGAGGATGGCAGAACTCTTTCTGACTACAA 6014263 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| ||||| || || | ||| | ||| ||||| | || || ||||| Sbjct 6014262 CATTCAGAAGGAATCTACGCTTCATCTTGTTCTGCGTCTTCGTGGAGGCAT 6014212 >seq3 Length=10655775 Score = 140 bits (154), Expect = 3e-28 Identities = 180/247 (73%), Gaps = 1/247 (0%) Strand=Plus/Minus Query 26972 TTTTAATTTATA-CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTC 27030 ||||| | || | | |||||||||| || || || || ||||||| ||| | || |||| Sbjct 2298219 TTTTATTGTAGAGCACCATGCAGATTTTCGTGAAGACATTGACCGGGAAGACCATAACTC 2298160 Query 27031 TTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAG 27090 ||||||| || | || ||| | || |||| || ||| ||| || || || ||||||| Sbjct 2298159 TTGAAGTTGAGGCTTCTGACACCATCGAGAACGTAAAAGCAAAGATCCAGGATAAAGAAG 2298100 Query 27091 GCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGA 27150 |||| ||||| ||||| |||||||| || | || || || || ||||||| | | Sbjct 2298099 GCATCCCACCTGATCAGCAGCGTTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGACGTA 2298040 Query 27151 CCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGG 27210 | | || |||||||| ||||||||||| || || | |||||||| | | ||||| | Sbjct 2298039 CTTTGTCTGATTACAATATTCAAAAGGAATCCACTCTCCATTTGGTCCTCAGATTGCGTG 2297980 Query 27211 GTGGCAT 27217 |||| || Sbjct 2297979 GTGGAAT 2297973 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| ||||| || ||| | ||||| | ||||| || | || Sbjct 2297974 ATGCAGATCTTTGTCAAAACCCTGACAGGAAAGACCATTACATTGGAAGTTGAGGCATCA 2297915 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| |||||||||||||||||||| || || || ||||| Sbjct 2297914 GACACGATCGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCCCCAGATCAG 2297855 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || |||||| | |||||| | || |||| ||||| ||| Sbjct 2297854 CAGAGATTGATCTTTGCTGGAAAACAACTTGAAGACGGCCGTACGCTTTCTGATTATAAC 2297795 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || || || || || ||| | || | ||| | || ||||| || Sbjct 2297794 ATTCAGAAAGAATCCACATTGCATCTAGTCCTCCGTCTACGTGGTGGAAT 2297745 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||||| || || || ||||||| || || || ||| | || Sbjct 2294862 ATGCAGATTTTTGTCAAAACTCTCACTGGTAAAACTATTACGCTGGAGGTCGAAGCTTCA 2294803 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | || || ||||| ||||| ||||||||||| || ||||||||| Sbjct 2294802 GACACGATTGAAAACGTGAAGGCGAAAATACAAGATAAAGAAGGCATTCCTCCCGATCAA 2294743 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | |||| | ||| ||||| || | || || | ||| | ||||| || || Sbjct 2294742 CAAAGACTAATTTTCGCGGGCAAGCAGCTAGAGGATGGACGGACTTTATCCGACTATAAT 2294683 Query 27168 ATTCAAAAGGAGTCGAC 27184 ||||| || || || || Sbjct 2294682 ATTCAGAAAGAATCTAC 2294666 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 27079 AAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGG 27138 ||||||| ||||| || ||||| || |||||| | || || | |||||| |||||| | | Sbjct 2294999 AAGACAAGGAAGGAATCCCACCGGACCAACAGAGGTTGATCTTCGCCGGGAAACAACTTG 2294940 Query 27139 AAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTT 27198 ||||| || || |||| || ||||| ||||| || || || || || |||||||||| Sbjct 2294939 AAGACGGTCGTACACTTTCTGACTACAATATTCAGAAAGAATCCACATTGCATTTGGTTT 2294880 Query 27199 TG 27200 || Sbjct 2294879 TG 2294878 >seq4 Length=9433735 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| || || ||||| || || || || | ||||| || || || || | | Sbjct 6954563 CCATGCAGATCTTCGTGAAAACCCTTACGGGTAAAACCATTACCCTCGAGGTAGAGGCCT 6954622 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | || | || |||| ||||| || || || ||||| || || || || || |||| Sbjct 6954623 CTGATACTATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCGCCAGATC 6954682 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 ||||||| | || | |||||||||||| |||| || | || | |||||||||| Sbjct 6954683 AACAGCGACTCATCTTCGCCGGCAAACAGCTGGAGGATGGACGCACTTTGTCCGATTACA 6954742 Query 27166 ACATTCAAAA 27175 |||| ||||| Sbjct 6954743 ACATCCAAAA 6954752 >seq37 Length=2964283 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 49818 ATACGCACCCGGTAAAAGACATTGGTTGAAAATTAAAAAAGACTACTTGTGCGATGGCGC 49877 ||||| || || || || ||||||||||| | ||||| || || |||||| ||| || Sbjct 2059998 ATACGAGCCGGGAAAGAGGCATTGGTTGAAGGTAAAAAAGGATTATCTGTGCGGTGGTGC 2059939 Query 49878 CATGGCCGATAGCGTTGATTTGGTGGTTTTGGGTGCATGGTACGGTTCTGGAAAAAAGGG 49937 ||||| ||||||| ||| | || || | ||||||||||||||| | || || || || Sbjct 2059938 GATGGCTGATAGCGCAGATCTCGTCGTGCTTGGTGCATGGTACGGTACAGGCAACAAAGG 2059879 Query 49938 T 49938 | Sbjct 2059878 T 2059878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434902982142720