Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq14 154 1e-32 seq4 131 1e-25 seq3 123 2e-23 >seq14 Length=6127344 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| ||||| ||||| || ||||| || || |||||||| || | | Sbjct 6013758 AATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTC 6013699 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| |||| |||||| |||||||| || | || || ||||| Sbjct 6013698 AGACACCATCGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATCA 6013639 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || || |||||||||||||||||||| | | ||| | |||||||| Sbjct 6013638 ACAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACAA 6013579 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| |||||||| |||||| | || ||||||||| | | || ||||| Sbjct 6013578 CATCCAAAAAGAATCCACACTCCACTTAGTTTTACGACTTCGTGGAGG 6013531 Score = 129 bits (142), Expect = 4e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| ||||| ||||| || ||||| || || |||||||| || | | Sbjct 6013986 AATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTC 6013927 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| |||| |||||| |||||||| || | || || ||||| Sbjct 6013926 AGACACCATCGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATCA 6013867 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || || |||||||||||| ||||||| | | ||| | ||| ||||| Sbjct 6013866 ACAGCGTCTGATTTTCGCCGGCAAACAATTGGAAGATGGCAGAACTCTTTCCGACTACAA 6013807 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || ||||| ||||| | || | ||| | | | ||||||||| Sbjct 6013806 CATTCAGAAAGAATCCACGCTTCACCTGGTTCTGCGTCTTCGAGGAGGA 6013758 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||||||||| |||||||| ||||| || || || || | | Sbjct 6014441 ATGCAAATCTTTGTAAAAACCCTCACTGGAAAAACCATCACCCTTGAGGTGGAAGCTTCT 6014382 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| | ||| || || || ||||||||| | || ||||||||| Sbjct 6014381 GACACTATCGAAAATGTCAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAA 6014322 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || ||||| || || ||||| || || | | ||| | || |||||| Sbjct 6014321 CAACGTTTGATCTTTGCTGGAAAGCAACTAGAGGATGGCAGAACTCTTTCTGACTACAAC 6014262 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || || || || || | ||| | ||| Sbjct 6014261 ATTCAGAAGGAATCTACGCTTCATCTTGTT 6014232 >seq4 Length=9433735 Score = 131 bits (144), Expect = 1e-25 Identities = 145/191 (76%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| ||||| ||||| || || ||||| || || || | Sbjct 6954565 ATGCAGATCTTCGTGAAAACCCTTACGGGTAAAACCATTACCCTCGAGGTAGAGGCCTCT 6954624 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| | || ||| | || | || | | ||||| || || | ||||||||||| Sbjct 6954625 GATACTATCGAGAATGTCAAGGCTAAGA-TCCAGGACAAGGAGGGAATTCCGCCAGATCA 6954683 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||||||||| ||||| || | ||||||||| ||||||||| Sbjct 6954684 ACAGCGACTCATCTTCGCCGGCAAACAGCTGGAGGATGGACGCACTTTGTCCGATTACAA 6954743 Query 23790 CATACAAAAAG 23800 ||| ||||||| Sbjct 6954744 CATCCAAAAAG 6954754 >seq3 Length=10655775 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || || || || || ||||| |||||||| | | Sbjct 2298202 ATGCAGATTTTCGTGAAGACATTGACCGGGAAGACCATAACTCTTGAAGTTGAGGCTTCT 2298143 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | ||||| ||| || || |||||||| | || || ||||| Sbjct 2298142 GACACCATCGAGAACGTAAAAGCAAAGATCCAGGATAAAGAAGGCATCCCACCTGATCAG 2298083 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || ||||| || || || |||||||| | ||| ||||| |||||||| Sbjct 2298082 CAGCGTTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGACGTACTTTGTCTGATTACAAT 2298023 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||| || ||||| | ||||| || | || ||||| || ||| Sbjct 2298022 ATTCAAAAGGAATCCACTCTCCATTTGGTCCTCAGATTGCGTGGTGGA 2297975 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || |||||||| || ||||| || || || | |||||||| | | Sbjct 2297975 AATGCAGATCTTTGTCAAAACCCTGACAGGAAAGACCATTACATTGGAAGTTGAGGCATC 2297916 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| | || |||||| ||||||||||| | || |||||||| Sbjct 2297915 AGACACGATCGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCCCCAGATCA 2297856 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || |||||||| ||||||| || || | ||||| || Sbjct 2297855 GCAGAGATTGATCTTTGCTGGAAAACAACTTGAAGACGGCCGTACGCTTTCTGATTATAA 2297796 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || ||||| |||||||| ||| |||| Sbjct 2297795 CATTCAGAAAGAATCCACATTGCATCTAGT 2297766 Score = 100 bits (110), Expect = 2e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || |||||||| || ||||| || ||||| | ||| |||| | | Sbjct 2297747 AATGCAGATTTTTGTCAAAACCCTGACAGGAAAGACCATCACGTTGGAAATTGAGGCGTC 2297688 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 |||||| | || ||| | || | |||||| |||||||||| | || || |||| Sbjct 2297687 AGACACTATCGAGAATGTCAAGGC-CAAAATTCAATACAAAGAAGGAATCCCCCCGGATC 2297629 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || || ||||| |||||||| ||||| | ||||| | || || | Sbjct 2297628 AGCAGAGATTGATCTTCGCCGGAAAACAACTTGAAGATGGTCGCACACTTTCTGACTATA 2297569 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820 | || || || || || || || ||||| ||| Sbjct 2297568 ATATTCAGAAGGAATCTACCTTGCATTTGGTT 2297537 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| ||||| || ||||| || || || || || || | | Sbjct 2294862 ATGCAGATTTTTGTCAAAACTCTCACTGGTAAAACTATTACGCTGGAGGTCGAAGCTTCA 2294803 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || ||||| || |||||||| | || || |||||| Sbjct 2294802 GACACGATTGAAAACGTGAAGGCGAAAATACAAGATAAAGAAGGCATTCCTCCCGATCAA 2294743 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | |||| || || ||||| || || || || | ||| |||||| ||| || || Sbjct 2294742 CAAAGACTAATTTTCGCGGGCAAGCAGCTAGAGGATGGACGGACTTTATCCGACTATAAT 2294683 Query 23791 ATACAAAAAGAGTCCACA 23808 || || ||||| || ||| Sbjct 2294682 ATTCAGAAAGAATCTACA 2294665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337997917120688