Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq14 149 1e-30 seq94 147 5e-30 seq3 143 6e-29 seq292 96.9 8e-15 seq2836 93.3 1e-13 seq2053 93.3 1e-13 seq1114 93.3 1e-13 seq27 91.5 4e-13 seq2768 89.7 1e-12 seq2308 86.0 1e-11 seq1605 84.2 5e-11 seq42 84.2 5e-11 seq10 84.2 5e-11 >seq14 Length=6127344 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||| ||||| || || || ||||| || || | ||||| || | | ||| Sbjct 6014220 ACGAAGACGCAGAACAAGATGAAGCGTAGATTCCTTCTGAATGTTGTAGTCAGAAAGAGT 6014279 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| ||||| ||||| ||||| ||||| ||||| | |||||||| || || |||||||| Sbjct 6014280 TCTGCCATCCTCTAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACC 6014339 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| || ||||||||||| || ||| |||||| ||||| || | |||||| || | Sbjct 6014340 TTCTTTATCTTGGATCTTAGCTTTGACATTTTCGATAGTGTCAGAAGCTTCCACCTCAAG 6014399 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || || || | ||||||| || | |||||| Sbjct 6014400 GGTGATGGTTTTTCCAGTGAGGGTTTTTACAAAGATTTGCAT 6014441 Score = 145 bits (160), Expect = 2e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| | || | |||||| |||||||||||||||| |||||||| | | ||| Sbjct 6013536 ACGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGT 6013595 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| |||||||| || || || || ||||| || || || ||||| || || ||||| || Sbjct 6013596 TCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCC 6013655 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || ||||| || || || ||| || ||||||||||||||| | ||| || || | Sbjct 6013656 CTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGACTTCGAG 6013715 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || || || | |||||| | ||| | ||||||| Sbjct 6013716 GGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCATT 6013758 Score = 138 bits (152), Expect = 3e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||| || || || || ||||||||||| || | ||||| |||| | |||| Sbjct 6013993 CGAAGACGCAGAACCAGATGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGAAAGAGTT 6014052 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || || ||||| | ||| || ||||| ||||| | ||||| ||||| || |||||||| Sbjct 6014053 CTGCCGTCTTCCAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGAGGAATACCC 6014112 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || |||||||||||||| || ||| ||| || ||||| || | ||| || || | Sbjct 6014113 TCTTTGTCTTGGATCTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCAACTTCAAGG 6014172 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || ||||| | ||| |||| || | ||||| Sbjct 6014173 GTGATAGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCAT 6014213 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||| || ||||| || ||||||||||| || | ||||| |||| | |||| Sbjct 6013765 CGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGAAAGAGTT 6013824 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || |||||||| | || || || ||||| || || || ||||| || || ||||| || Sbjct 6013825 CTGCCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCC 6013884 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || ||||| || || || ||| || ||||||||||||||| | ||| || || | Sbjct 6013885 TCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGACTTCGAGG 6013944 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || || || | |||||| | ||| | ||||||| Sbjct 6013945 GTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCATT 6013986 >seq94 Length=459532 Score = 147 bits (162), Expect = 5e-30 Identities = 102/116 (88%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || |||||||||||||||||||| || ||||| ||||||||||||||||| |||||||| Sbjct 24265 AAGATTTGACCATCAGTAATAGAAATGACATTGGTAGGGATATAAGCAGACACATCACCG 24206 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||||||||||| ||||||||| || || | ||||||||||| ||||||| ||| Sbjct 24205 GCTTGTGTTTCGATAACAGGTAAAGCAGTCAACGATCCACCACCTAAATTTTCATT 24150 >seq3 Length=10655775 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 ||||| || |||||||| || || |||||||| || | ||| || |||| ||||| | Sbjct 2294644 AAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTCTGAATATTATAGTCGGATAAAGTCCG 2294703 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 ||||| ||||||||||| || ||||| || |||| |||||| ||||| ||||| ||||| Sbjct 2294704 TCCATCCTCTAGCTGCTTGCCCGCGAAAATTAGTCTTTGTTGATCGGGAGGAATGCCTTC 2294763 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 || ||||| || || |||||| ||| || |||||||| | ||| || || | ||| Sbjct 2294764 TTTATCTTGTATTTTCGCCTTCACGTTTTCAATCGTGTCTGAAGCTTCGACCTCCAGCGT 2294823 Query 225675 GATCGTCTTGCCCGTCAAAGTTTT 225698 || || || || || | |||||| Sbjct 2294824 AATAGTTTTACCAGTGAGAGTTTT 2294847 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| | ||| ||||| | |||||||||||||| ||||| | ||||||||| | |||||| Sbjct 2297981 ACGCAATCTGAGGACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATCAGACAAAGT 2298040 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| ||||| ||||| | || || || || || || || || Sbjct 2298041 ACGTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTGGGATGCC 2298100 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| || || ||||||||| || || ||||||||||| || | || || || | Sbjct 2298101 TTCTTTATCCTGGATCTTTGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCAACTTCAAG 2298160 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || ||||| || || | ||| | ||||| Sbjct 2298161 AGTTATGGTCTTCCCGGTCAATGTCTTCACGAAAATCTGCAT 2298202 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || || | ||||||||||| || | || ||||| | | || | || ||| Sbjct 2297763 AGGACTAGATGCAATGTGGATTCTTTCTGAATGTTATAATCAGAAAGCGTACGGCCGTCT 2297822 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || ||||| ||||| | || || || || || || || ||||| |||||| Sbjct 2297823 TCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCT 2297882 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || || || ||| ||| |||||| |||||||| | || || || || || || ||| Sbjct 2297883 TGAATTTTGGCCTTGACATTTTCGATCGTGTCTGATGCCTCAACTTCCAATGTAATGGTC 2297942 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || |||| ||||| | || | |||||| Sbjct 2297943 TTTCCTGTCAGGGTTTTGACAAAGATCTGCATT 2297975 >seq292 Length=12108 Score = 96.9 bits (106), Expect = 8e-15 Identities = 74/88 (84%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 370683 CAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGATGGATCAAAAA 370742 |||||||||| ||||||||||||||||| ||||| || || ||||| || || ||||||| Sbjct 1195 CAAAAAATCAAAATAAATGTTGATAAAGAATAGGGTCTCCCCCGCCAGAAGGGTCAAAAA 1254 Query 370743 AGCTAGTATTAAAATTTCTATCAGTTAA 370770 | |||||| || |||| ||||||||| Sbjct 1255 ATGAAGTATTTAAGTTTCAATCAGTTAA 1282 >seq2836 Length=18815 Score = 93.3 bits (102), Expect = 1e-13 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||||||||||||||| ||||| ||||||||||| || || || || || || || Sbjct 720 TTCTGGATGACCAAAAAATCAAAATAAGTGTTGATAAAGAATTGGGTCTCCCCCTCCGGA 661 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 || |||||||| ||||| ||||||| ||| ||||| Sbjct 660 AGGGTCAAAAAATGATGTATTTAAATTTCGATCTGTTAA 622 >seq2053 Length=2436 Score = 93.3 bits (102), Expect = 1e-13 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||||||||||||||| ||||| ||||||||||| || || || || || || || Sbjct 1544 TTCTGGATGACCAAAAAATCAAAATAAGTGTTGATAAAGAATTGGGTCTCCCCCTCCGGA 1485 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 || |||||||| ||||| ||||||| ||| ||||| Sbjct 1484 AGGGTCAAAAAATGATGTATTTAAATTTCGATCTGTTAA 1446 >seq1114 Length=3269 Score = 93.3 bits (102), Expect = 1e-13 Identities = 77/93 (83%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 370679 TGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGA-TCGCCTCCGCCTGATGGATC 370737 || ||||||||||| ||||||||||||||||| || || || || ||||| || ||||| Sbjct 1181 TGTCCAAAAAATCAAAATAAATGTTGATAAAGCATGGGGGTCTCCCCCGCCAGAAGGATC 1122 Query 370738 AAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 |||||| |||||| || |||| ||||||||| Sbjct 1121 AAAAAATGAAGTATTTAAGTTTCGATCAGTTAA 1089 >seq27 Length=4538920 Score = 91.5 bits (100), Expect = 4e-13 Identities = 84/105 (80%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||| ||||||||||| ||||||||||| ||||| |||||||| | || || || Sbjct 1079898 TTCAGGATGGCCAAAAAATCAAAATAAATGTTGGTAAAGAATAGGATCTCTCCCTCCGGA 1079839 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAACAGT 370776 || | ||||||| | | || ||||||| ||| ||||| | ||| Sbjct 1079838 GGGGTAAAAAAAGAGA-TGTTTAAATTTCGATCTGTTAATATAGT 1079795 Score = 87.8 bits (96), Expect = 4e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 370683 CAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGATGGATCAAAAA 370742 |||||||||| ||||||||||||||||| || ||||| || || || || | ||||||| Sbjct 4531096 CAAAAAATCAAAATAAATGTTGATAAAGAATGGGATCTCCCCCTCCAGAAGAGTCAAAAA 4531155 Query 370743 AGCTAGTATTAAAATTTCTATCAGTTAA 370770 | |||||| || |||| ||||||||| Sbjct 4531156 ATGAAGTATTTAAGTTTCGATCAGTTAA 4531183 >seq2768 Length=2033 Score = 89.7 bits (98), Expect = 1e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || || ||||||||||| ||||||||||||||||| || | || || ||||| || Sbjct 1031 TTCGGGGTGTCCAAAAAATCAAAATAAATGTTGATAAAGAATGGAGTCTCCCCCGCCAGA 972 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 || |||||||| || ||| || |||| ||||||||| Sbjct 971 AGGTTCAAAAAATGAAGAATTTAAGTTTCGATCAGTTAA 933 >seq2308 Length=2260 Score = 86.0 bits (94), Expect = 1e-11 Identities = 81/101 (80%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAA-TCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTG 370730 ||| || || |||||||| ||| ||||||||||||||||| || || || || ||||| | Sbjct 966 TTCGGGGTGTCCAAAAAAATCAAAATAAATGTTGATAAAGAATGGGGTCTCCCCCGCCAG 907 Query 370731 ATGGATC-AAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 | || || |||||| |||||| || |||| ||||||||| Sbjct 906 AAGGGTCAAAAAAATGAAGTATTTAAGTTTCGATCAGTTAA 866 >seq1605 Length=2767 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/99 (79%), Gaps = 4/99 (4%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||| ||||||||||| |||||||||||||| ||||| || || ||||| | Sbjct 1718 TTCGGGATGTCCAAAAAATCA----AAATGTTGATAAAGAATAGGGTCTCCCCCGCCAAA 1663 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 || |||||||| |||||| | |||| ||||||||| Sbjct 1662 AGGGTCAAAAAATGAAGTATTTATGTTTCGATCAGTTAA 1624 >seq42 Length=2518118 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||| || |||||||| ||||||||||||||||| || || || || || | || Sbjct 2367261 TTCTGGATGTCCGAAAAATCAAAATAAATGTTGATAAAGAATGGGGTCTCCACCTTCAGA 2367202 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 || ||||||||| |||||| || |||| ||||| || Sbjct 2367201 AGGGTCAAAAAAGGAAGTATTTAAGTTTCAGTCAGTCAA 2367163 >seq10 Length=6925647 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 370682 CCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGATGGATCAAAA 370741 |||||||||| ||||||||||||||||| || | || || ||||| || || |||||| Sbjct 8816 CCAAAAAATCGAAATAAATGTTGATAAAGAATGAGGTCTCCCCCGCCAGAAGGGTCAAAA 8757 Query 370742 AAGCTAGTATTAAAATTTCTATCAGTTAA 370770 || |||||| || |||| ||||||||| Sbjct 8756 AATGAAGTATTTAAGTTTCGATCAGTTAA 8728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192487867888184