Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq54 136 5e-27 seq73 100 4e-16 seq30 96.9 5e-15 >seq54 Length=1719504 Score = 136 bits (150), Expect = 5e-27 Identities = 195/270 (72%), Gaps = 6/270 (2%) Strand=Plus/Minus Query 78378 CTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAAC 78437 || ||||| || |||| | ||| | |||||||||| || || || ||||| ||||| Sbjct 1010903 CTGGACATCTGCTGATTATTAGTACAAGCATTAAATAGAGTTGGTGAAGCATGTGTAAAA 1010844 Query 78438 CATTTTTCAGA-AAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAAT 78496 || ||| || || || ||| |||||||| || || || ||||| || |||||| Sbjct 1010843 TATCGTTCGGACAAATA-ATTATATGTTTCTATGACTTTATCAATGTCATTTTCATGAAT 1010785 Query 78497 TCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTT 78556 || || ||||| | |||||||||||| ||||| || || || ||||| ||| ||||| Sbjct 1010784 ACCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCATTGATTTT 1010725 Query 78557 CAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCTC 78614 || || ||| | | || | ||||||||||||| ||| || || ||||| || | Sbjct 1010724 CAGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAA--TCACGA 1010667 Query 78615 TCGTAAATAATAACAGAATTTAGTTTATCT 78644 ||||| || ||| |||||| ||||| ||| Sbjct 1010666 TCGTATATTATAGCAGAATCCAGTTTCTCT 1010637 Score = 125 bits (138), Expect = 1e-23 Identities = 198/280 (71%), Gaps = 4/280 (1%) Strand=Plus/Minus Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCT-CTG-TTAAAACTCTAAGGAGATGAGGAT 77118 ||||| ||||| || | ||| | ||||| ||| ||||| ||| || | ||| |||| Sbjct 1012639 TTCTTCATATCTTCGTCCCATAGA--CCTCTACTGGTTAAATCTCGCAGTAAATGTGGAT 1012582 Query 77119 TAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTT 77178 | || || |||||||||||||||||| | | || ||||| || ||||| |||| Sbjct 1012581 TGACAATGATAAATTCTCCAGACAATACGCGCCTCACATATATATTGCTTGTATACGGTT 1012522 Query 77179 CCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCA 77238 | | ||||| |||||||| ||||| || || || || || |||||||||||||| | | Sbjct 1012521 CAATGGATTCGTTGTTTCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTA 1012462 Query 77239 ATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAA 77298 | | | |||||| | || ||| | ||| || |||| | | | ||||||||| | Sbjct 1012461 AAAGAGAATTTCTTACTCCGTGTTTCGCGATCTTCGCTTTCAATTCATCCCAATCCCATA 1012402 Query 77299 GATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAAT 77338 || || ||| ||| | ||| | ||| ||||| ||||| Sbjct 1012401 AATTTGTCGGTTTAACGTTCCACATATCATATTGAAGAAT 1012362 Score = 100 bits (110), Expect = 4e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 78742 CACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAA 78801 ||||||| ||| || ||||||||||||||||||||||| | |||||||||||||| | Sbjct 1010427 CACTAAAACTTTTCTTGGTTTCCTTGTGTAGATTAGATACGTCAATTCTTGCAGCTAGTA 1010368 Query 78802 TAGCATAATCAGGATGTT 78819 |||||||||||||||||| Sbjct 1010367 TAGCATAATCAGGATGTT 1010350 Score = 84.2 bits (92), Expect = 3e-11 Identities = 209/314 (67%), Gaps = 5/314 (2%) Strand=Plus/Minus Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583 ||||||||||||| ||||| ||| || |||| | |||| ||||||||| | |||| Sbjct 1012035 TACCAATAGGTCTGTGTCTACGATTAGATGTTTTCGTTTCTTTGATAGGATAAAAGTTAA 1011976 Query 77584 TGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAA 77643 || || | ||||| ||||| | | || | ||| | || || |||||| | Sbjct 1011975 CATCGATGACTTTATCTAGATTACGAGTGACGATTTTCGCGACTGTTTTAAGTTTATCGA 1011916 Query 77644 AATCAAATCTTCCA---TCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAA 77700 |||| || || | || |||| |||||||| | ||| |||||||||| ||| || | Sbjct 1011915 AATCGAAAGTTTTAGTGTCATTAACGAACATGTTGACAGCGATAGATGCTAAATTGCATA 1011856 Query 77701 CTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGA 77760 | || || || || | |||| || || || || || | || || ||||| | Sbjct 1011855 CAGCGACTTCTCCAGGACCCGAGTATTCAATAATTTCAGTGCACAAGTTGCTGCATTTAA 1011796 Query 77761 TAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGC-ATGAGTCCTTATAAAGAATAAAC 77819 |||||| | || || || || ||| |||| |||| || || ||||| ||| | Sbjct 1011795 CAGTGCCTATATGCTGATGATTCGATTTTCGGTTGCAATGA-TCTTTGTAAAGCATATAA 1011737 Query 77820 GGAGTCCCGGTTTC 77833 || || || ||||| Sbjct 1011736 GGTGTTCCAGTTTC 1011723 >seq73 Length=1005568 Score = 100 bits (110), Expect = 4e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 78739 CATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTA 78798 || ||||||| | ||| ||||| |||||||||||||| |||| ||| ||||| || |||| Sbjct 745044 CACCACTAAAAACTTTCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTA 744985 Query 78799 GAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATAT 78858 | |||||||| |||||||| || | ||| ||||| |||| || || ||| ||| Sbjct 744984 AGGTTGCATAATCTGGATGTTGATTAATCATAGTCGCTGCAGTTTCAGCTGCCAAATTAT 744925 Query 78859 CTAACTCTATAGTTGTGACCCCA 78881 | || || | ||||| || ||| Sbjct 744924 CCAATTCGCTTGTTGTCACTCCA 744902 Score = 84.2 bits (92), Expect = 3e-11 Identities = 125/175 (71%), Gaps = 7/175 (4%) Strand=Plus/Minus Query 77356 ATCCATTATATGTTTCATAAGGTCCTTCTGTTTCA---GCTAGTTCACAACTCGCTTCCA 77412 |||| ||||| | |||||||| |||| ||||| |||| ||| ||||| ||||| | Sbjct 746848 ATCC-TTATACGACTCATAAGGACCTT---TTTCAATAGCTATTTCGCAACTGGCTTCTA 746793 Query 77413 ATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTAT 77472 || || ||||| | || || ||||| | | || || || | ||||| | || | Sbjct 746792 GAGCGCCATAATAGAGAGTCTCAAAAATTTGAATGTTAAGTTCATTAGCTTCTTTGCTTT 746733 Query 77473 CAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACC 77527 |||| ||||| | | |||||| |||||||||||||| || || |||||||| Sbjct 746732 CAAATGGATATCTCATTAAAATAAATGCATCTGCTAATCCTTGTACACCAATACC 746678 >seq30 Length=3857846 Score = 96.9 bits (106), Expect = 5e-15 Identities = 141/199 (71%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 48432 TACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCT 48491 ||||| || || ||||||||||| || || || ||||| || || ||||| | ||||| Sbjct 1773245 TACATCTCAGAATGAATATTTTCTATGGCAATTTGAAAGCCATAGAAACAACGTGCTTCG 1773304 Query 48492 GTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTA 48551 | || | || || | |||| ||| | ||||||||| || || ||||| | Sbjct 1773305 GAAATTTTCACTTCTTGGCTGAATCTCTCAATTAGATTCTCATTAACGATACCATCGGAA 1773364 Query 48552 GCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTT---A 48608 || |||||||||||||| ||||| |||||| ||| || | |||| | ||||| | Sbjct 1773365 GCGGCAAAAAATGCTAAAACATGAGAGATAAAACGTTTCTCATCGGAATTTAGTTTTTCA 1773424 Query 48609 TTCCAGTCATTGATATCTT 48627 |||||||| || | |||| Sbjct 1773425 TTCCAGTCCTTCTTGTCTT 1773443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694644173991040