Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq54 123 4e-23 seq30 109 8e-19 seq73 95.1 2e-14 >seq54 Length=1719504 Score = 123 bits (136), Expect = 4e-23 Identities = 175/246 (71%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 75688 GGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCG 75747 ||||||| ||| || | ||| ||||| ||||| |||||||||||||||||| | | Sbjct 1012607 GGTTAAATCTCGCAGTAAATGTGGATTGACAATGATAAATTCTCCAGACAATACGCGCCT 1012548 Query 75748 AGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGT 75807 || ||||| || ||||| ||||| | ||||| |||||||| ||||| || || || Sbjct 1012547 CACATATATATTGCTTGTATACGGTTCAATGGATTCGTTGTTTCCTAAAATCTGTGCCGT 1012488 Query 75808 TGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTT 75867 || || || ||||||||||| | || | | |||||| | || ||| | ||| || Sbjct 1012487 CGAGGCCGTTGGCATAGGTGCTATTAAAAGAGAATTTCTTACTCCGTGTTTCGCGATCTT 1012428 Query 75868 ATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTG 75927 |||| | | | ||||||||| | || || ||| ||| | ||| | ||| ||||| Sbjct 1012427 CGCTTTCAATTCATCCCAATCCCATAAATTTGTCGGTTTAACGTTCCACATATCATATTG 1012368 Query 75928 TAGAAT 75933 ||||| Sbjct 1012367 AAGAAT 1012362 Score = 116 bits (128), Expect = 5e-21 Identities = 190/269 (71%), Gaps = 6/269 (2%) Strand=Plus/Minus Query 76973 CTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAAC 77032 || ||||| || |||| | ||| | |||||||| | || || || ||||| || || Sbjct 1010903 CTGGACATCTGCTGATTATTAGTACAAGCATTAAATAGAGTTGGTGAAGCATGTGTAAAA 1010844 Query 77033 CATTTTTCAGA-AAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAAT 77091 || ||| || || || ||| |||||||| || ||| || || || || |||||| Sbjct 1010843 TATCGTTCGGACAAATA-ATTATATGTTTCTATGACTTTATCAATGTCATTTTCATGAAT 1010785 Query 77092 TCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTT 77151 || ||||| || | |||||||||||| ||||| | || || ||||| ||| ||||| Sbjct 1010784 ACCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCATTGATTTT 1010725 Query 77152 CAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCTT 77209 || || ||| | | || | ||||||||||||| ||| || || ||||| || | Sbjct 1010724 CAGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAA--TCACGA 1010667 Query 77210 TCGTAAATAATAACCGAATTTAGTTTGTC 77238 ||||| || ||| | |||| ||||| || Sbjct 1010666 TCGTATATTATAGCAGAATCCAGTTTCTC 1010638 Score = 86.0 bits (94), Expect = 9e-12 Identities = 106/142 (75%), Gaps = 6/142 (4%) Strand=Plus/Minus Query 76508 GTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGA 76567 ||||| || || |||||||||||||||||||||| || |||||| |||||| ||| Sbjct 1011547 GTATACAATTCTTTAAATTCATCTCCCCAAACATCAGATAAGCCAGGAGATTCATGTGGA 1011488 Query 76568 CACATCAATGACCACTCACCATCTTCCTTA---ACCCGTTTCATAAAGAGATCAGGTATC 76624 ||||| | | | | || | || || ||| || |||| |||||| ||||| |||||| Sbjct 1011487 CACATTA--GGCTCCACATC-TCGTCATTATATACACGTTCCATAAAAAGATCTGGTATC 1011431 Query 76625 CATAGAGCAATAAATAGATCTC 76646 |||||| | ||||| |||| Sbjct 1011430 CATAGACCGTAAAATAAGTCTC 1011409 Score = 84.2 bits (92), Expect = 3e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 ||||| ||| || ||||||||||||||||| |||||| | ||||| |||||||| || Sbjct 1010425 CTAAAACTTTTCTTGGTTTCCTTGTGTAGATTAGATACGTCAATTCTTGCAGCTAGTATA 1010366 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||| |||||||||| || | || || || |||| || || | | |||| | | Sbjct 1010365 GCATAATCAGGATGTTTAGTTGCCATTGTAGCAGCAGTTTCAGCTGCCAGATTATCAAGT 1010306 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTA 77507 | ||||| ||||| ||||| || | || |||| || |||| Sbjct 1010305 ATAACTGTAGTTACTCCAGAATATAAACCACGTATCACTTGAATCGCTA 1010257 >seq30 Length=3857846 Score = 109 bits (120), Expect = 8e-19 Identities = 144/199 (72%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 46921 TACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 46980 ||||| || |||||||| ||||| || || || ||||| || || ||||| | |||||| Sbjct 1773245 TACATCTCAGAATGAATATTTTCTATGGCAATTTGAAAGCCATAGAAACAACGTGCTTCG 1773304 Query 46981 GTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTA 47040 | ||| | || ||| | |||| ||| | ||||||||| || || ||||| | Sbjct 1773305 GAAATTTTCACTTCTTGGCTGAATCTCTCAATTAGATTCTCATTAACGATACCATCGGAA 1773364 Query 47041 GCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTT---A 47097 || ||||||||||| || ||||| |||||| ||| ||||||| | | ||||| | Sbjct 1773365 GCGGCAAAAAATGCTAAAACATGAGAGATAAAACGTTTCTCATCGGAATTTAGTTTTTCA 1773424 Query 47098 TTCCAGTCATTGATATCTT 47116 |||||||| || | |||| Sbjct 1773425 TTCCAGTCCTTCTTGTCTT 1773443 >seq73 Length=1005568 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 ||||| | ||| ||||| |||||||||||||| |||| || |||||||| |||| || Sbjct 745039 CTAAAAACTTTCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGGTT 744980 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||| || |||||||| || | || ||||| |||| || || ||| |||| ||| Sbjct 744979 GCATAATCTGGATGTTGATTAATCATAGTCGCTGCAGTTTCAGCTGCCAAATTATCCAAT 744920 Query 77459 TCTATAGTAGTAACTCC 77475 || | || || ||||| Sbjct 744919 TCGCTTGTTGTCACTCC 744903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712909126475520