Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq14 134 3e-26 seq4 127 5e-24 seq3 127 5e-24 >seq14 Length=6127344 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTT 151961 || || || || |||||||||||||||||||| | | |||||| |||||||| || | Sbjct 6013555 TGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCCATCTTCCAGTTGT 6013614 Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || |||||||| || || | ||| || |||| | ||||| || || || |||||||| Sbjct 6013615 TTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTTGTCCTGAATTTTG 6013674 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 || || | || | | |||||||| || ||||| || ||||| ||||| || ||| Sbjct 6013675 GCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGACTTCGAGGGTAATGGTTTTACCAGTG 6013734 Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105 ||||| |||||||| | |||||| Sbjct 6013735 AGAGTTTTCACGAAAATTTGCATT 6013758 Score = 102 bits (112), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||||||||| ||||| || || || |||||||| || | | |||||| ||||| Sbjct 6014230 AGAACAAGATGAAGCGTAGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTGCCATCC 6014289 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 ||||| ||||| || || ||||| | | || || || | | || ||||| || | Sbjct 6014290 TCTAGTTGCTTT--CCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTAT 6014347 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 |||| || || ||||||| | || | |||| ||| || || ||||| || || | Sbjct 6014348 CTTGGATCTTAGCTTTGACATTTTCGATAGTGTCAGAAGCTTCCACCTCAAGGGTGATGG 6014407 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || ||||| || || || |||| ||||| Sbjct 6014408 TTTTTCCAGTGAGGGTTTTTACAAAGATTTGCAT 6014441 >seq4 Length=9433735 Score = 127 bits (140), Expect = 5e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 151915 CTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGA 151974 ||||||||||||||||||||| ||||| | ||||| || || ||| |||||||||| Sbjct 6954754 CTTTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGA 6954695 Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034 | || | ||| || || | || ||||| ||||| || || || || |||||| ||| Sbjct 6954694 TGAGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCT 6954635 Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 | | | || || |||||| || || ||||| ||||| ||||| || || ||||||| Sbjct 6954634 CGATAGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTAAGGGTTTTCACGA 6954575 Query 152095 AGACCTGCAT 152104 ||| |||||| Sbjct 6954574 AGATCTGCAT 6954565 >seq3 Length=10655775 Score = 127 bits (140), Expect = 5e-24 Identities = 160/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||||||||| | ||| ||||| || || ||||| || |||||||| | ||||| | || Sbjct 2297987 TCTGAGGACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATCAGACAAAGTACGTCC 2298046 Query 151949 ATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||| || ||||| || || ||||| | | |||||| || | | ||| ||||| Sbjct 2298047 ATCTTCCAGCTGCTTT--CCAGCAAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCT 2298104 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || ||| ||| || |||| | | |||| ||| ||| ||||||||||| Sbjct 2298105 TTATCCTGGATCTTTGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCAACTTCAAGAGTT 2298164 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || | ||||||||||| | |||||| Sbjct 2298165 ATGGTCTTCCCGGTCAATGTCTTCACGAAAATCTGCAT 2298202 Score = 111 bits (122), Expect = 4e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || |||| || ||||| ||||| ||||| ||||| || || || || |||| |||||| Sbjct 2294642 CTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTCTGAATATTATAGTCGGATAAAGTC 2294701 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||||| ||||| || || ||||| || || || || || || | | || ||| Sbjct 2294702 CGTCCATCCTCTAGCTGCTTGCCCGCGAAAATTAGTCTTTGTTGATCGGGAGGAATGCCT 2294761 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || ||||| ||||| || || | || | |||||||| || || || || Sbjct 2294762 TCTTTATCTTGTATTTTCGCCTTCACGTTTTCAATCGTGTCTGAAGCTTCGACCTCCAGC 2294821 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||||| || |||||||| || || || | |||||| Sbjct 2294822 GTAATAGTTTTACCAGTGAGAGTTTTGACAAAAATCTGCAT 2294862 Score = 107 bits (118), Expect = 4e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| ||||| | || || ||||| || ||||| ||||| | | || | || || Sbjct 2297762 GAGGACTAGATGCAATGTGGATTCTTTCTGAATGTTATAATCAGAAAGCGTACGGCCGTC 2297821 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || ||| || || ||||| | |||||||| || | | ||||||||| || || Sbjct 2297822 TTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTC 2297881 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||||||| |||||| | || | ||||||| ||| ||||| | ||||| || Sbjct 2297882 TTGAATTTTGGCCTTGACATTTTCGATCGTGTCTGATGCCTCAACTTCCAATGTAATGGT 2297941 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || || || |||| ||||||| Sbjct 2297942 CTTTCCTGTCAGGGTTTTGACAAAGATCTGCATT 2297975 Score = 93.3 bits (102), Expect = 1e-13 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | ||| | ||||| || || || || || || || | | || | ||||| Sbjct 2297534 GAGAACCAAATGCAAGGTAGATTCCTTCTGAATATTATAGTCAGAAAGTGTGCGACCATC 2297593 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || ||| ||||||||||| | |||||||| |||| | ||||||||| || | Sbjct 2297594 TTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGGGGGATTCCTTCTTTGTA 2297653 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||||||| |||||| |||| | ||||||| ||| | ||| | || || || Sbjct 2297654 TTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGACGCCTCAATTTCCAACGTGATGGT 2297713 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || || || || | ||||||| Sbjct 2297714 CTTTCCTGTCAGGGTTTTGACAAAAATCTGCATT 2297747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153778874478956