Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq14 203 7e-47 seq3 170 4e-37 seq4 149 1e-30 seq44 89.7 1e-12 seq37 89.7 1e-12 seq20 89.7 1e-12 seq8 89.7 1e-12 seq6 89.7 1e-12 seq32 86.0 1e-11 seq28 86.0 1e-11 >seq14 Length=6127344 Score = 203 bits (224), Expect = 7e-47 Identities = 181/227 (80%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || |||||||| | |||| |||||| || ||||||||||| | | Sbjct 6013987 CCTCCTCGAAGACGCAGAACCAGATGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGAA 6014046 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | ||| || || | ||||| || ||||||||||||||||| |||||| ||| Sbjct 6014047 AGAGTTCTGCCGTCTTCCAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGAGGA 6014106 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||| |||||||||||||| |||||||| | || || ||||| |||||||| ||| Sbjct 6014107 ATACCCTCTTTGTCTTGGATCTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCAACT 6014166 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| || |||||||| | |||||| || || |||||||| Sbjct 6014167 TCAAGGGTGATAGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCAT 6014213 Score = 179 bits (198), Expect = 8e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || || || ||||| | ||| ||| || || ||||||||||||| | Sbjct 6014215 CCTCCACGAAGACGCAGAACAAGATGAAGCGTAGATTCCTTCTGAATGTTGTAGTCAGAA 6014274 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | ||||||||||||||| || || |||||||||||||||||||| || ||| Sbjct 6014275 AGAGTTCTGCCATCCTCTAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGAGGA 6014334 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| || || ||||||||||| ||||| || | ||||||||||| |||||||| || Sbjct 6014335 ATACCTTCTTTATCTTGGATCTTAGCTTTGACATTTTCGATAGTGTCAGAAGCTTCCACC 6014394 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| || || || || | || || || || || ||||| Sbjct 6014395 TCAAGGGTGATGGTTTTTCCAGTGAGGGTTTTTACAAAGATTTGCAT 6014441 Score = 174 bits (192), Expect = 3e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || | || | || | ||| |||||||||||||||||| |||| Sbjct 6013530 ACCTCCACGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGA 6013589 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || | |||||| || |||||||| ||||| || |||| ||| ||||| || || Sbjct 6013590 AAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGG 6013649 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||| ||||| || || || || |||||| | ||||| ||||| ||||||||||| Sbjct 6013650 AATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGAC 6013709 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 |||||| || || || ||||| || | ||| || ||||| || |||||| Sbjct 6013710 TTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCATT 6013758 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || ||||| || | |||| |||||| || ||||||||||| | | Sbjct 6013759 CCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGAA 6013818 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | |||||| || | |||||| ||||| || |||| ||| ||||| || ||| Sbjct 6013819 AGAGTTCTGCCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGA 6013878 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||| ||||| || || || || |||||| | ||||| ||||| |||||||||||| Sbjct 6013879 ATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGACT 6013938 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||||| || || || ||||| || | ||| || ||||| || |||||| Sbjct 6013939 TCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCATT 6013986 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 1981398 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 1981454 >seq3 Length=10655775 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||||| | || |||| ||| | ||| ||| ||||| || ||||| |||| Sbjct 2297976 CCACCACGCAATCTGAGGACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATCAGAC 2298035 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || || ||||| || || || || || |||||||||||||| || || ||| || Sbjct 2298036 AAAGTACGTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTGGG 2298095 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || || || |||||||||||||||||| | ||||| ||||| ||||| || ||| Sbjct 2298096 ATGCCTTCTTTATCCTGGATCTTTGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCAACT 2298155 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || ||||| || ||||| ||||| ||||| |||||||| Sbjct 2298156 TCAAGAGTTATGGTCTTCCCGGTCAATGTCTTCACGAAAATCTGCAT 2298202 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || || ||||| || ||| |||||| || ||||| || |||| | Sbjct 2297748 CCACCACGTAGACGGAGGACTAGATGCAATGTGGATTCTTTCTGAATGTTATAATCAGAA 2297807 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| ||||| || || |||||||| || ||||||||||| | || || || || Sbjct 2297808 AGCGTACGGCCGTCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGG 2297867 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || |||||||| || || || || || | ||||| ||||| || || || ||| Sbjct 2297868 ATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCTGATGCCTCAACT 2297927 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || | || || ||||| || |||| || || || || ||||||||| Sbjct 2297928 TCCAATGTAATGGTCTTTCCTGTCAGGGTTTTGACAAAGATCTGCATT 2297975 Score = 134 bits (148), Expect = 3e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| | || || |||| ||| || || ||| || || || || ||||||| Sbjct 2297519 ACCACCACGTAAACGGAGAACCAAATGCAAGGTAGATTCCTTCTGAATATTATAGTCAGA 2297578 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| ||||| || |||||||| ||||| |||||||| | || || || || Sbjct 2297579 AAGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGGGG 2297638 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || || |||| ||| || || || || || | ||||||||||| || || || | Sbjct 2297639 GATTCCTTCTTTGTATTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGACGCCTCAAT 2297698 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||| | ||||| ||||| || |||| || || || || ||||||||| Sbjct 2297699 TTCCAACGTGATGGTCTTTCCTGTCAGGGTTTTGACAAAAATCTGCATT 2297747 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGG 282941 || |||||||| || || | || |||||| || || || ||||| | | || || Sbjct 2294645 AGTCGAAGTACAAGGTGAAGTGTAGATTCTTTCTGAATATTATAGTCGGATAAAGTCCGT 2294704 Query 282942 CCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCC 283001 ||||||||||| || || || || || || | | |||||| || ||||| || || Sbjct 2294705 CCATCCTCTAGCTGCTTGCCCGCGAAAATTAGTCTTTGTTGATCGGGAGGAATGCCTTCT 2294764 Query 283002 TTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 || ||||| || || || || ||| | || || ||||| ||||||||||| || || || Sbjct 2294765 TTATCTTGTATTTTCGCCTTCACGTTTTCAATCGTGTCTGAAGCTTCGACCTCCAGCGTA 2294824 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| || | ||| || || || |||||||| Sbjct 2294825 ATAGTTTTACCAGTGAGAGTTTTGACAAAAATCTGCAT 2294862 Score = 96.9 bits (106), Expect = 7e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| ||| || ||| |||||| || || |||||||||| ||| || || || || || Sbjct 2294882 ACCAAATGCAATGTGGATTCTTTCTGAATATTGTAGTCAGAAAGTGTACGACCGTCTTCA 2294941 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTT 283008 |||||||||||||| |||||||| | |||||||| || || || |||||||||| Sbjct 2294942 AGTTGTTTCCCGGCGAAGATCAACCTCTGTTGGTCCGGTGGGATTCCTTCCTTGTCTT 2294999 >seq4 Length=9433735 Score = 149 bits (164), Expect = 1e-30 Identities = 147/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969 |||||||||||||||| || | | ||||| |||||||| || ||||| ||||| |||| Sbjct 6954754 CTTTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGA 6954695 Query 282970 TCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTAT 283029 | | || ||||| || |||||| ||||||||||| |||||||| || || || | | Sbjct 6954694 TGAGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCT 6954635 Query 283030 CGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 ||||||| || || || || || ||||| || || || |||||||| | || || |||| Sbjct 6954634 CGATAGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTAAGGGTTTTCACGA 6954575 Query 283090 ATATCTGCAT 283099 | |||||||| Sbjct 6954574 AGATCTGCAT 6954565 >seq44 Length=2236265 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 957273 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 957329 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 957572 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 957628 >seq37 Length=2964283 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 2531202 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 2531258 >seq20 Length=5370898 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 273778 TCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACT 273837 ||||||||||||| || | ||| ||| ||||| ||||| || || | ||| || | Sbjct 500795 TCGTGAAAATGTATCTCGGACTGGCAGAATCCTTTCCACCAGCAAGTCTTGTACCGAATT 500854 Query 273838 GACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCA 273897 |||| |||| ||||| || ||||| |||||||| ||| ||| ||| || | ||| | Sbjct 500855 GACCGATGGGCTGTAGCAGATTAATGTTATTGCTACCCACGAAATTCTGCGCGAGATTAA 500914 Query 273898 CGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAAC 273957 | || ||| || || || ||| ||||| ||||| || |||||||| | | | | Sbjct 500915 CTATGGTCGCCATCAGAGACGTCTCACCGTGATGATAAGCAGAATGTTCGGCAACAGATC 500974 Query 273958 CACTGAACTGAGCAACCTTCACATCGC 273984 | || || || || ||||| |||| Sbjct 500975 CCGCCAATTGCGCGACTTTCACTTCGC 501001 >seq8 Length=7313927 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 2134949 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 2135005 >seq6 Length=7673328 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 4707395 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 4707339 >seq32 Length=3726508 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 2649737 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 2649793 >seq28 Length=4164731 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 2090242 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 2090186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046701165422744