Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq14 203 8e-47 seq4 158 3e-33 seq3 147 5e-30 >seq14 Length=6127344 Score = 203 bits (224), Expect = 8e-47 Identities = 174/215 (81%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||||||||||||||| || ||||| || |||||||| || ||| |||||| Sbjct 6013754 CAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTCAGAC 6013695 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || || |||||||||||||| ||||| || ||||| || || Sbjct 6013694 ACCATCGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATCAACAG 6013635 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| ||||| || |||||||| || |||||| | ||||| ||| || Sbjct 6013634 CGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACAACATC 6013575 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||||||||| ||||| || | ||||| |||| Sbjct 6013574 CAAAAAGAATCCACACTCCACTTAGTTTTACGACT 6013540 Score = 185 bits (204), Expect = 2e-41 Identities = 167/210 (80%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||||||||||||||| || ||||| || |||||||| || ||| |||||| Sbjct 6013982 CAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTCAGAC 6013923 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || || |||||||||||||| ||||| || ||||| || || Sbjct 6013922 ACCATCGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATCAACAG 6013863 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| ||||| | |||||||| || |||||| |||| || ||| | Sbjct 6013862 CGTCTGATTTTCGCCGGCAAACAATTGGAAGATGGCAGAACTCTTTCCGACTACAACATT 6013803 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || |||||||| || || || || ||| || Sbjct 6013802 CAGAAAGAATCCACGCTTCACCTGGTTCTG 6013773 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| || || ||||| |||||||| || || ||| || ||| Sbjct 6014210 CAGATCTTTGTAAAGACTCTTACGGGTAAAACTATCACCCTTGAAGTTGAAGCTTCTGAC 6014151 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||||| || |||||||| || || ||||| ||||||||| Sbjct 6014150 ACAATAGAAAATGTAAAAGCTAAGATCCAAGACAAAGAGGGTATTCCTCCTGACCAGCAA 6014091 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || |||||| | ||||| || || |||||| |||| || ||| | Sbjct 6014090 CGTTTGATCTTTGCTGGTAAACAGTTGGAAGACGGCAGAACTCTTTCCGACTACAACATT 6014031 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || |||||||| || || ||||| ||| || Sbjct 6014030 CAGAAAGAATCCACGCTTCATCTGGTTCTG 6014001 >seq4 Length=9433735 Score = 158 bits (174), Expect = 3e-33 Identities = 147/187 (79%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| || || || ||||| || ||||||||||| || ||| || Sbjct 6954568 CAGATCTTCGTGAAAACCCTTACGGGTAAAACCATTACCCTCGAGGTAGAGGCCTCTGAT 6954627 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| ||||| ||||| |||||||| || ||||| || || || || || Sbjct 6954628 ACTATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCGCCAGATCAACAG 6954687 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||||||||| |||||||| || |||||| | ||| | ||||||| ||| || Sbjct 6954688 CGACTCATCTTCGCCGGCAAACAGCTGGAGGATGGACGCACTTTGTCCGATTACAACATC 6954747 Query 178104 CAAAAAG 178110 ||||||| Sbjct 6954748 CAAAAAG 6954754 >seq3 Length=10655775 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || ||||||||||| || ||||| || || || ||||| ||| |||||| Sbjct 2294859 CAGATTTTTGTCAAAACTCTCACTGGTAAAACTATTACGCTGGAGGTCGAAGCTTCAGAC 2294800 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || || || || || |||||||| || ||||| || || ||| Sbjct 2294799 ACGATTGAAAACGTGAAGGCGAAAATACAAGATAAAGAAGGCATTCCTCCCGATCAACAA 2294740 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| || ||||| || || ||||| || |||||| ||||| | |||| ||||| | Sbjct 2294739 AGACTAATTTTCGCGGGCAAGCAGCTAGAGGATGGACGGACTTTATCCGACTATAATATT 2294680 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || |||||||| ||||| || ||||| | |||| ||| Sbjct 2294679 CAGAAAGAATCTACACTTCACCTTGTACTTCGACTTAGA 2294641 Score = 143 bits (158), Expect = 6e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || ||||| || |||||||| || ||||| | || | || |||||| Sbjct 2297743 CAGATTTTTGTCAAAACCCTGACAGGAAAGACCATCACGTTGGAAATTGAGGCGTCAGAC 2297684 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| ||||| || ||||| |||||||||||||||| ||||| ||||| Sbjct 2297683 ACTATCGAGAATGTCAAGGCCAAAATTCAATACAAAGAAGGAATCCCCCCGGATCAGCAG 2297624 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||||||||| || |||||||| | || ||| | || ||||| | Sbjct 2297623 AGATTGATCTTCGCCGGAAAACAACTTGAAGATGGTCGCACACTTTCTGACTATAATATT 2297564 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || ||||| || ||||| | ||| Sbjct 2297563 CAGAAGGAATCTACCTTGCATTTGGTT 2297537 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| || |||||||| || || || | || || || |||||| Sbjct 2297971 CAGATCTTTGTCAAAACCCTGACAGGAAAGACCATTACATTGGAAGTTGAGGCATCAGAC 2297912 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| || ||||| ||||||||||||||||| || || ||||| Sbjct 2297911 ACGATCGAAAATGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCCCCAGATCAGCAG 2297852 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || |||||||| || ||||| || | || ||| | ||||||||| | Sbjct 2297851 AGATTGATCTTTGCTGGAAAACAACTTGAAGACGGCCGTACGCTTTCTGATTATAACATT 2297792 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || |||||||| ||| ||||||| || Sbjct 2297791 CAGAAAGAATCCACATTGCATCTAGT 2297766 Score = 138 bits (152), Expect = 3e-27 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || | || || || || || || || || || || || ||| Sbjct 2298199 CAGATTTTCGTGAAGACATTGACCGGGAAGACCATAACTCTTGAAGTTGAGGCTTCTGAC 2298140 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| ||| |||||| ||||| |||||||| ||||| || || ||||| Sbjct 2298139 ACCATCGAGAACGTAAAAGCAAAGATCCAGGATAAAGAAGGCATCCCACCTGATCAGCAG 2298080 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || ||||| ||||| ||||||||| | ||| | | ||||| || | Sbjct 2298079 CGTTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGACGTACTTTGTCTGATTACAATATT 2298020 Query 178104 CAAAAAGAATCAACACTGCAT 178124 ||||| ||||| || || ||| Sbjct 2298019 CAAAAGGAATCCACTCTCCAT 2297999 Score = 95.1 bits (104), Expect = 3e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| ||||||||||| |||||||| || | | ||||||||||| ||||| || ||| Sbjct 2294997 GACAAGGAAGGAATCCCACCGGACCAACAGAGGTTGATCTTCGCCGGGAAACAACTTGAA 2294938 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || | || ||| | || || || | || |||||||| ||| ||||| | |||||| Sbjct 2294937 GACGGTCGTACACTTTCTGACTACAATATTCAGAAAGAATCCACATTGCATTTGGTTTTG 2294878 Query 178134 AGACT 178138 || || Sbjct 2294877 AGGCT 2294873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203687460922184