Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq1248 113 3e-20 >seq1248 Length=5779413 Score = 113 bits (124), Expect = 3e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||| || || || | | |||||| || || ||||||||||| | ||| || | Sbjct 4700800 CTTTGTATTCAGCACCAAAGTATCGCCACTGGAAACCGTACACAGGTCCCAAATCACCCT 4700859 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | ||||||||| || ||| ||| || || | || || ||||| ||||||||| Sbjct 4700860 CCTCTCTGTCAGTGAAGCCACAGGAATCCAAGAAAGCTCGTGAACCATTTTCATCCCAAA 4700919 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACA 102212 |||| | || | || | |||||| | || |||||| ||||||||||||| | Sbjct 4700920 TGTGAATACCCTTGTCCGACAATTCTTTGGAATTTGTCGATCCTTTGATAAACCACAATA 4700979 Query 102213 GTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAA 102264 ||||||||| || ||| ||| |||||| ||||| || | | |||||| Sbjct 4700980 GTTCTTCAATTACTGCTCGCCAGAATACTTGTTTAGTTGTCAGTAATGGAAA 4701031 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 101752 AGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCC 101811 ||| |||||||| |||||| | || | | ||||| || ||||||||||||||||| Sbjct 4700412 AGTAACATGAGCGATCATGTACGTCAGCAAGGAATATGACGCTATGTTAAATGGCACTCC 4700471 Query 101812 TAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATA 101871 ||| ||||| || || ||||||||| || || ||| | | ||| | | || || Sbjct 4700472 TAAACCCATGTCTGCGCTTCTTTGATAAAGCTGCGTGGACAATTCTCCGTTATTTACGTA 4700531 Query 101872 AAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAAC--ATTC 101929 |||||| || || || |||||||| |||| || ||||| || || | |||| Sbjct 4700532 AAATTGTACCAAAGTGTGGCACGGCGGCAATGCCATCTTTGGAATATC--AACCGGATTC 4700589 Query 101930 CAAGCACACATTAACATCCTTCTATC 101955 || || |||||| || | |||||| Sbjct 4700590 CAGGCTGACATTATAATACGTCTATC 4700615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361244375739050