Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1492 107 2e-18 seq1170 100 3e-16 seq1238 91.5 2e-13 >seq1492 Length=1263116 Score = 107 bits (118), Expect = 2e-18 Identities = 188/269 (70%), Gaps = 6/269 (2%) Strand=Plus/Plus Query 54404 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 54463 || ||||| || ||| | |||| | |||||||||| || || ||||| || ||||| Sbjct 356879 CTGGACATCTGCTGATTATTAGTACAAGCATTAAATAGAGTTGGTGAAGCATGTGTAAAA 356938 Query 54464 CATTTTTCAGA-AAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAAT 54522 || |||||| || || ||| || || || || || || || || || |||||| Sbjct 356939 TATCGTTCAGACAAATA-ATTATATGTTTCTATGACTTTATCAATGTCATTTTCATGAAT 356997 Query 54523 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 54582 || || || || | ||| ||||| || ||||| || || || ||||| || ||||| Sbjct 356998 ACCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCATTGATTTT 357057 Query 54583 CAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGT 54640 ||||| ||| | | || | ||||||||||||| ||| || || ||||| || || Sbjct 357058 CAGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAA--TCACGA 357115 Query 54641 TCGTAAATAATAACTGAGTTGAGTTTATC 54669 ||||| || ||| | || | ||||| || Sbjct 357116 TCGTATATTATAGCAGAATCCAGTTTCTC 357144 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 53087 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 53146 ||||| || || || | ||||| ||| ||||||| ||| || | ||| ||||| Sbjct 355143 TTCTTCATATCTTCGTCCCATAGACCTCTACTGGTTAAATCTCGCAGTAAATGTGGATTG 355202 Query 53147 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 53206 || | |||||||||||||||||| | || || ||||| || ||||||||||| Sbjct 355203 ACAATGATAAATTCTCCAGACAATACGCGCCTCACATATATATTGCTTGTATACGGTTCA 355262 Query 53207 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 53266 | || || || ||||| ||||| || || || || || || ||||||||||| | || Sbjct 355263 ATGGATTCGTTGTTTCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAA 355322 Query 53267 AAACTATTTCTAAGACCGT 53285 | | |||||| | |||| Sbjct 355323 AGAGAATTTCTTACTCCGT 355341 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 ||||||| ||| || ||||| ||||||||||| |||||| | ||||| || ||||| | Sbjct 357355 CACTAAAACTTTTCTTGGTTTCCTTGTGTAGATTAGATACGTCAATTCTTGCAGCTAGTA 357414 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 | |||||||| ||||||| || | || || || |||| |||| |||| | || | Sbjct 357415 TAGCATAATCAGGATGTTTAGTTGCCATTGTAGCAGCAGTTTCAGCTGCCAGATTATCAA 357474 Query 54888 ATTCTACCGTTGTTACTCCATTATATA 54914 | || || ||||||||| ||||| Sbjct 357475 GTATAACTGTAGTTACTCCAGAATATA 357501 >seq1170 Length=7610050 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 ||||||| | ||| ||||| || ||||||||||| |||| || |||||||| |||| Sbjct 7500298 CACTAAAAACTTTCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGG 7500239 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 | |||||||| |||||||| || | ||| ||||| |||| |||| || | | |||| Sbjct 7500238 TTGCATAATCTGGATGTTGATTAATCATAGTCGCTGCAGTTTCAGCTGCCAAATTATCCA 7500179 Query 54888 ATTCTACCGTTGTTACTCCA 54907 |||| ||||| |||||| Sbjct 7500178 ATTCACTTGTTGTCACTCCA 7500159 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 53416 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 53475 ||||| ||| ||||| || |||| || || ||||| | || || || || | | || Sbjct 7502068 AGCTATTTCGCAACTGGCTTCTAGAGCGCCATAATAGAGAGTCTCAAAAATTTGAATGTT 7502009 Query 53476 TAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAA 53535 || || | ||||| ||| ||||||||||| | | | |||||| || |||||||| Sbjct 7502008 AAGTTCATTAGCTTCTTTGCTTTCAAATGGATATCTCATTAAAATAAATGCATCTGCTAA 7501949 Query 53536 TCCTTGAACACCAATACC 53553 |||||| ||||||||||| Sbjct 7501948 TCCTTGTACACCAATACC 7501931 >seq1238 Length=3292682 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/201 (70%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 24176 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC 24235 ||||||| || ||||| || ||||| | || || || || |||||||| |||| || Sbjct 3272002 TTCGTTGCTGAAGGTGAGACCTGGCATGACTCCTCGTTTCTTTAGCCAAAAAATGGCTGC 3272061 Query 24236 AAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA 24295 || ||| ||||| || || || ||||||||||| || | | | ||| | | Sbjct 3272062 GAAACTGCCACTGAAGAAGATACCCTCAACTGCCGCAAATGCGACTACACGTTCGGGAAA 3272121 Query 24296 ACCGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 24352 ||||| ||||| ||||| ||| ||||||| |||||||| || |||||||| Sbjct 3272122 CGTAGCGCTCTCATGATTGATCCAGTTTAATGCCCAATTAGCCTTCTTCTTGACACAAGG 3272181 Query 24353 CATTGTCTCTATAGCATTAAA 24373 | |||||| || |||||||| Sbjct 3272182 AAGTGTCTCAATCGCATTAAA 3272202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593710096644000