Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1181 104 2e-17 >seq1181 Length=949089 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || ||||| | |||| |||||| ||||| ||||||||||| || ||||| | Sbjct 810750 CCACCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCCTTTTGAATATTGTAGTCAGAA 810809 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | |||| || || ||||| || || | || | |||||||||||| || Sbjct 810810 AGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGG 810869 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| || || ||| || | ||| |||||| | ||| | Sbjct 810870 ATTCCTTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATAGTATCTGACGCCTCAACT 810929 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||||||| || || || || |||||||| || ||||| Sbjct 810930 TCCAACGTGATGGTCTTTCCTGTCAATGTCTTGACAAAAATCTGCAT 810976 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || ||||| | |||| |||||| ||||| ||||| ||||| || ||||| | Sbjct 810522 CCACCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAA 810581 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | |||| || || ||||| || || | || | |||||||||||| || Sbjct 810582 AGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGG 810641 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG-T 21127 | ||||||||||| || || ||| || | ||| ||||| | ||| || Sbjct 810642 ATTCCTTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATCGTATC-CGACGCTTCGAC 810700 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || || || || ||||| | |||||||||||| |||||||| Sbjct 810701 TTCCAAAGTGATTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 810748 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || ||||| | |||| |||||| ||||| || || ||||| |||||||| | Sbjct 809838 CCGCCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCTTTCTGAATATTATAGTCAGAA 809897 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | |||| || || ||||| || || | || | ||||| |||||| || Sbjct 809898 AGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGTTGGTCCGGTGGG 809957 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG-T 21127 | ||||||||||| || || ||| || | ||| || || | ||| || Sbjct 809958 ATTCCTTCCTTGTCTTGAATTTTGGCTTTGACATTCTCGATCGTGTC-CGACGCTTCGAC 810016 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || || || || ||||| | |||||||||||| |||||||| Sbjct 810017 TTCCAAAGTGATTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 810064 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || || | |||| |||||| ||||| ||||| ||||| || ||||| | Sbjct 810294 CCACCGCGAAGTCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAA 810353 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | |||| || || ||||| || || | || | || ||||||||| || Sbjct 810354 AGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTTTGCTGGTCCGGTGGG 810413 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG-T 21127 | ||||||||||| || || ||| || | ||| ||||| | ||| || Sbjct 810414 ATTCCTTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATCGTATC-CGACGCTTCGAC 810472 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || || || || ||||| | |||||||||||| |||||||| Sbjct 810473 TTCCAAAGTGATTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 810520 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || |||| ||||| |||| ||| | |||||| ||||||||||| || || || | Sbjct 811660 TTCCACCACGCAATCTGAGGACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATCAG 811719 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || || | | || |||||||| || || ||| | || | | |||||| || | Sbjct 811720 ACAAAGTACGTCCATCTTCCAGCTGCTTTCCAGCAAATATCAAACGCTGCTGATCAGGTG 811779 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | |||||| || || ||||||| ||| || | ||| || ||| | ||| Sbjct 811780 GGATGCCTTCTTTATCCTGGATCTTTGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCAA 811839 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| | || |||||||| ||||| || || || || || || ||||| Sbjct 811840 CTTCAAGAGTTATGGTCTTCCCGGTCAATGTCTTCACGAAAATCTGCAT 811888 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || ||||| | |||| |||||| || || ||||| ||||| |||||||| | Sbjct 811206 CCACCGCGAAGCCTCAATACCAAATGCAAGGTAGATTCCTTCTGAATATTATAGTCAGAA 811265 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | || || || ||||| || || | || | ||||||||| ||| ||| Sbjct 811266 AGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGGGGG 811325 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||| |||| || || || || | ||| ||| || | ||| || Sbjct 811326 ATTCCTTCTTTGTATTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGACGCCTCAATT 811385 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| || |||||||| || || | ||||||||||| || |||||| Sbjct 811386 TCCAACGTGATGGTCTTTCCTGTCAGGGTTTTGACAAAAATCTGCATT 811433 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || || | |||| |||||| ||||| ||||| ||||| || ||||| | Sbjct 810066 CCACCGCGAAGTCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAA 810125 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | |||| || || ||||| || || | || | || ||||||||| || Sbjct 810126 AGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTTTGCTGGTCCGGTGGG 810185 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG-T 21127 | ||||||||||| || || ||| || | ||| || || | ||| || Sbjct 810186 ATTCCTTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATCGTGTC-CGACGCTTCGAC 810244 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || || || || ||||| | |||||||||||| |||||||| Sbjct 810245 TTCCAAAGTGATTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 810292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422251223259800