Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1163 141 1e-28 seq1181 114 1e-20 seq1153 114 1e-20 seq1238 109 6e-19 >seq1163 Length=8263949 Score = 141 bits (156), Expect = 1e-28 Identities = 163/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| ||||| ||||| || |||||||| ||| |||| |||||||| | Sbjct 3693055 AATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTC 3692996 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | ||||| | |||| ||||||| ||||||||||| || || |||| | Sbjct 3692995 AGACACCATCGAAAACG-TAAAGGCTAAAATTCAGGACAAAGAGGGAATTCCACCGGATC 3692937 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | || || || || | ||| |||||||| |||| || | | || || |||||||| Sbjct 3692936 AACAGCGTCTGATTTTCGCCGGCAAACAATTGGAAGATGGCAGAACTCTTTCCGACTACA 3692877 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||| ||||| || ||||||| || || || |||| Sbjct 3692876 ACATTCAGAAAGAATCCACGCTTCACCTGGTTCTGCG 3692840 Score = 136 bits (150), Expect = 4e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| ||||| ||||| || |||||||||||| | || || |||||| | Sbjct 3692827 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATCACCCTTGAAGTTGAAGCCTC 3692768 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | ||||| | |||| ||||||| ||||||||||| || || |||| | Sbjct 3692767 TGACACAATAGAAAACG-TAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATC 3692709 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | || || || || | ||| |||||||| |||| || | | || || |||||||| Sbjct 3692708 AACAGCGTCTGATTTTCGCCGGCAAACAATTGGAAGATGGTAGAACTCTTTCCGACTACA 3692649 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||| ||||| || ||||||| || || || |||| Sbjct 3692648 ACATTCAGAAAGAATCCACGCTTCACCTGGTTCTGCG 3692612 Score = 132 bits (146), Expect = 5e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| ||||| ||||| || |||||||| ||| |||| |||||||| | Sbjct 3691915 AATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTC 3691856 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | ||||| | |||| ||||||| ||||||||||| || || |||| | Sbjct 3691855 AGACACCATCGAAAACG-TAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATC 3691797 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | || || || || | ||| |||||||| ||||| || | | || || || |||| Sbjct 3691796 AACAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACA 3691737 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||| || || |||| || || |||| || || Sbjct 3691736 ACATCCAAAAAGAATCCACACTCCACTTAGTTTTACG 3691700 Score = 122 bits (134), Expect = 9e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || ||||| || || ||||| |||||||||||| | || || |||||| | Sbjct 3693282 ATGCAGATCTTTGTAAAGACTCTTACGGGTAAAACCATCACCCTTGAAGTTGAAGCCTCT 3693223 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| | |||| ||||||| ||||||||||| || || |||| || Sbjct 3693222 GACACAATAGAAAACG-TAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATCA 3693164 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || || | ||| |||||||| |||| || | | || || ||| ||||| Sbjct 3693163 ACAGCGTCTGATTTTCGCCGGCAAACAATTGGAAGATGGTAGAACTCTTTCCGATTACAA 3693104 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| ||||| || ||||||| || || || |||| Sbjct 3693103 CATTCAGAAAGAATCCACGCTTCACCTGGTTCTGCG 3693068 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| ||||| ||||| || |||||||| || |||| |||||||| | Sbjct 3692143 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATTACTCTCGAAGTCGAAGCTTC 3692084 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | ||||| | || | ||||| | || ||||| || || || |||| | Sbjct 3692083 AGACACTATCGAAAACG-TAAAAGCCAAAATCCAGGATAAAGAAGGAATTCCACCGGATC 3692025 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | || || || || | ||| || ||||| ||||| || | | || || |||||||| Sbjct 3692024 AACAGCGTCTGATTTTCGCCGGTAAACAACTGGAAGATGGCAGAACTCTTTCCGACTACA 3691965 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||| || || || | || || || || || |||| Sbjct 3691964 ACATTCAAAAAGAATCTACACTTCACCTGGTTCTGCG 3691928 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| ||||| ||||| || |||||||| || |||| |||||||| | Sbjct 3692371 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATTACTCTCGAAGTCGAAGCTTC 3692312 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | ||||| | || | ||||| | || ||||| || || || |||| | Sbjct 3692311 AGACACTATCGAAAACG-TAAAAGCCAAAATCCAGGATAAAGAAGGAATTCCACCGGATC 3692253 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | || || || || | ||| || ||||| ||||| || | | || || |||||||| Sbjct 3692252 AACAGCGTCTGATTTTCGCCGGTAAACAACTGGAAGATGGCAGAACTCTTTCCGACTACA 3692193 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||| || || || | || || || || || |||| Sbjct 3692192 ACATTCAAAAAGAATCTACACTTCACCTGGTTCTGCG 3692156 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| ||||| ||||| || ||||| || || |||| |||||||| | Sbjct 3692599 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACTATTACTCTCGAAGTCGAAGCTTC 3692540 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | ||||| | || | ||||| | || ||||| || || || |||| | Sbjct 3692539 AGACACTATCGAAAACG-TAAAAGCCAAAATCCAGGATAAAGAAGGAATTCCACCGGATC 3692481 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | || || || || | ||| || ||||| ||||| || | | || || |||||||| Sbjct 3692480 AACAGCGTCTGATTTTCGCCGGTAAACAACTGGAAGATGGCAGAACTCTTTCCGACTACA 3692421 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||| || || || |||| || || || || |||| Sbjct 3692420 ACATTCAAAAAGAATCCACACTTCACCTGGTTCTGCG 3692384 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || |||||||| ||||| || |||||||||||| | || || ||||| | Sbjct 3693510 ATGCAAATCTTTGTAAAAACCCTCACTGGAAAAACCATCACCCTTGAGGTGGAAGCTTCT 3693451 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| |||| | || || | || ||||| || || || | || || Sbjct 3693450 GACACTATCGAAAATGTCAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAA 3693391 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| || || || || || || || | | || || ||||||||| Sbjct 3693390 CAACGTTTGATCTTTGCTGGAAAGCAACTAGAGGATGGCAGAACTCTTTCTGACTACAAC 3693331 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || |||||||| | ||||| ||||| || |||| Sbjct 3693330 ATTCAGAAGGAATCTACGCTTCATCTTGTTCTGCG 3693296 >seq1181 Length=949089 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || |||||||| || || ||||| ||||| | || |||||||| | Sbjct 810292 ATGCAAATTTTTGTCAAAACGCTTACCGGTAAAACAATCACTTTGGAAGTCGAAGCGTCG 810233 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||| | ||||||| ||||| || || ||||| |||||||| Sbjct 810232 GACACGATCGAGAATGTCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCACCGGACCAG 810173 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| | | |||| ||| || ||||| || || |||| || || || |||||||| Sbjct 810172 CAAAGGTTGATCTTCGCCGGGAAACAACTTGAAGACGGTCGTACACTTTCTGACTACAAT 810113 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || |||||||| |||| ||||| | || ||| Sbjct 810112 ATTCAGAAGGAATCCACATTGCATTTGGTTTTG 810080 Score = 109 bits (120), Expect = 6e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || |||||||| || || ||||| ||||| | || |||||||| | Sbjct 810520 ATGCAAATTTTTGTCAAAACGCTTACCGGTAAAACAATCACTTTGGAAGTCGAAGCGTCG 810461 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | |||| | ||||||| ||||| || || ||||| |||||||| Sbjct 810460 GATACGATCGAGAATGTCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCACCGGACCAG 810401 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| | | |||| ||| || ||||| || || |||| || || || |||||||| Sbjct 810400 CAAAGGTTGATCTTCGCCGGGAAACAACTTGAAGACGGTCGTACACTTTCTGACTACAAT 810341 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || |||||||| |||| ||||| | || ||| Sbjct 810340 ATTCAGAAGGAATCCACATTGCATTTGGTTTTG 810308 >seq1153 Length=2037154 Score = 114 bits (126), Expect = 1e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || ||||| |||||||| ||| |||| || || ||| | Sbjct 1924148 ATGCAGATCTTCGTGAAAACCCTTACGGGTAAAACCATTACCCTCGAGGTAGAGGCCTCT 1924089 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||||| || || | ||||| ||||| || || | || || Sbjct 1924088 GATACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCGCCAGATCAA 1924029 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||||| ||| |||||||||||||| || | ||||| | ||| |||||| Sbjct 1924028 CAGCGACTCATCTTCGCCGGCAAACAGCTGGAGGATGGACGCACTTTGTCCGATTACAAC 1923969 Query 40870 ATCCAGAA 40877 ||||| || Sbjct 1923968 ATCCAAAA 1923961 >seq1238 Length=3292682 Score = 109 bits (120), Expect = 6e-19 Identities = 160/223 (72%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGC 117004 || || || || || ||||| | || || ||||| ||||||| | ||||| | | Sbjct 3272205 TTATTTAATGCGATTGAGACACTTCCTTGTGTCAAGAAGAAGGCTAATTGGGCATTAAAC 3272146 Query 117005 TGGATCGCCGGCA-GAGAG-GCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCG 117062 |||||| || ||||| || | || ||| || | || || || ||||| || | Sbjct 3272145 TGGATCAAT--CATGAGAGCGCTACGTTTCCCGAACGTGTAGTCGCATTTGCGGCAGTTG 3272088 Query 117063 AGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCA 117122 |||| ||||||| ||||||||||| ||||| |||||||| |||||||| || ||| Sbjct 3272087 AGGGTATCTTCTTCAGTGGCAGTTTCGCAGCCATTTTTTGGCTAAAGAAACGAGGAGTCA 3272028 Query 117123 TGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGA 117165 |||| || || || ||||||||||| || ||||| | ||||| Sbjct 3272027 TGCCAGGTCTCACCTTCAGCAACGAACTTATCTCACGAGACGA 3271985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515209217628000