Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1181 118 1e-21 seq1493 111 2e-19 seq1200 111 2e-19 seq1526 104 3e-17 seq1533 100 3e-16 seq1163 98.7 1e-15 seq1540 96.9 4e-15 seq1141 95.1 1e-14 seq1153 87.8 2e-12 >seq1181 Length=949089 Score = 118 bits (130), Expect = 1e-21 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 ||| ||||||||||||||| ||||| ||||||||||| |||| || || || |||| Sbjct 810080 CAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAAAGTGTACGACCGTC 810139 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || || || || || ||||| || | | |||||||| | || | | |||||||| Sbjct 810140 TTCAAGTTGTTTCCCGGCGAAGATCAACCTTTGCTGGTCCGGTGGGATTCCTTCCTTGTC 810199 Query 43091 CATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 43149 | ||| |||| | ||||| || | | |||||| || ||| || || | ||||| | Sbjct 810200 C-TGAATTTTGGCTTTGACATTCTCGATCGTGTCCGACGCTTCGACTTCCAAAGTGATTG 810258 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || || ||||| || ||||| |||||||| Sbjct 810259 TTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 810292 Score = 118 bits (130), Expect = 1e-21 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 ||| ||||||||||||||| ||||| ||||||||||| |||| || || || |||| Sbjct 810536 CAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAAAGTGTACGACCGTC 810595 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || || || || || ||||| || | | ||||||||| | || | | |||||||| Sbjct 810596 TTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATTCCTTCCTTGTC 810655 Query 43091 CATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 43149 | ||| |||| | ||||| || | | ||| || || ||| || || | ||||| | Sbjct 810656 C-TGAATTTTGGCTTTGACATTCTCGATCGTATCCGACGCTTCGACTTCCAAAGTGATTG 810714 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || || ||||| || ||||| |||||||| Sbjct 810715 TTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 810748 Score = 113 bits (124), Expect = 5e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 ||| ||||||||||||||| ||||| ||||||||||| |||| || || || |||| Sbjct 810308 CAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAAAGTGTACGACCGTC 810367 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || || || || || ||||| || | | |||||||| | || | | |||||||| Sbjct 810368 TTCAAGTTGTTTCCCGGCGAAGATCAACCTTTGCTGGTCCGGTGGGATTCCTTCCTTGTC 810427 Query 43091 CATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 43149 | ||| |||| | ||||| || | | ||| || || ||| || || | ||||| | Sbjct 810428 C-TGAATTTTGGCTTTGACATTCTCGATCGTATCCGACGCTTCGACTTCCAAAGTGATTG 810486 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || || ||||| || ||||| |||||||| Sbjct 810487 TTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 810520 Score = 109 bits (120), Expect = 6e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 ||| ||||||||||||||| ||||||||||||||||| |||| || || || |||| Sbjct 810764 CAAAACCAAATGCAATGTGGATTCCTTTTGAATATTGTAGTCAGAAAGTGTACGACCGTC 810823 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || || || || || ||||| || | | ||||||||| | || | | |||||||| Sbjct 810824 TTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATTCCTTCCTTGTC 810883 Query 43091 CATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 43149 | ||| |||| | ||||| || | | || || || || || || | |||||||| Sbjct 810884 C-TGAATTTTGGCTTTGACATTCTCGATAGTATCTGACGCCTCAACTTCCAACGTGATGG 810942 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || || | ||||| ||||| || ||||| Sbjct 810943 TCTTTCCTGTCAATGTCTTGACAAAAATCTGCAT 810976 Score = 104 bits (114), Expect = 3e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 ||| ||||||||||||||| || || |||||||| || |||| || || || |||| Sbjct 809852 CAAAACCAAATGCAATGTGGATTCTTTCTGAATATTATAGTCAGAAAGTGTACGACCGTC 809911 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || || || || || ||||| || | | ||| ||||| | || | | ||||||| Sbjct 809912 TTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGTTGGTCCGGTGGGATTCCTTCCTTGT- 809970 Query 43091 CATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 43149 | ||| |||| | ||||| || | | |||||| || ||| || || | ||||| | Sbjct 809971 CTTGAATTTTGGCTTTGACATTCTCGATCGTGTCCGACGCTTCGACTTCCAAAGTGATTG 810030 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || || ||||| || ||||| |||||||| Sbjct 810031 TTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 810064 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || | |||||| | ||||||||||| || ||||| |||||||| || |||| Sbjct 810978 CCACCACGTAAACGGAGAACCAAATGCAAGGTAGATTCCTTCTGAATATTATAGTCAGAA 811037 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || || || || || ||||| || | | ||||||||| | || Sbjct 811038 AGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAGATTAACCTCTGCTGGTCCGGAGGA 811097 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||| | | ||| |||| | ||||| || | | |||||| || ||| || Sbjct 811098 ATTCCTTCCTTAT-CTTGAATTTTGGCTTTGACATTCTCAATCGTGTCCGACGCTTCGAC 811156 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||| ||||| || || ||||| || ||||| |||||||| Sbjct 811157 TTCCAAAGTGATTGTTTTACCGGTAAGCGTTTTAACAAAAATTTGCAT 811204 Score = 89.7 bits (98), Expect = 6e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | ||| |||||||||||||||||||||| || ||| || | || || Sbjct 811680 ACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATCAGACAAAGTACGTCCATCTTCC 811739 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| ||||| ||||| | |||||||| || | || | || || || ||| | Sbjct 811740 AGCTGCTTTCCAGCAAATATCAAACGCTGCTGATCAGGTGGGATGCCTTCTTTATCCTGG 811799 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || ||| ||| | || | | ||||| | || || || | || ||||| || Sbjct 811800 ATCTTTGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCAACTTCAAGAGTTATGGTCTTC 811859 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||| || || || ||||| Sbjct 811860 CCGGTCAATGTCTTCACGAAAATCTGCAT 811888 >seq1493 Length=4376825 Score = 111 bits (122), Expect = 2e-19 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| || |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 4375096 AAAAAATTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 4375037 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 4375036 TGACCACTATACTACCGAGGA 4375016 >seq1200 Length=4144520 Score = 111 bits (122), Expect = 2e-19 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| || |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 3080834 AAAAAATTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 3080775 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 3080774 TGACCACTATACTACCGAGGA 3080754 >seq1526 Length=928046 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 784701 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 784642 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 784641 TACTACCGAGGA 784630 >seq1533 Length=2891333 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1421969 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 1422028 Query 60125 ATACTACCGAGGATT 60139 |||||| |||||||| Sbjct 1422029 ATACTATCGAGGATT 1422043 >seq1163 Length=8263949 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 5024923 TTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 5024982 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 5024983 TATACTATCGAGGA 5024996 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 5025230 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 5025289 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 5025290 ATACTATCGAGGA 5025302 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||||| | ||||| |||| || | ||| || || ||||| |||||||| | Sbjct 3693055 TCCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAATCGGA 3693114 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| | | || || | || || || ||||| || || ||||| || || | || Sbjct 3693115 AAGAGTTCTACCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGG 3693174 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCA 43134 | | ||| |||||| ||| |||| | | ||| | | ||||| | ||| | Sbjct 3693175 AATTCCCTCTTTGTCC-TGAATTTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAA 3693233 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | ||||||||||| ||||| || |||||||||||||| ||||| Sbjct 3693234 CTTCAAGGGTGATGGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCAT 3693282 >seq1540 Length=5613228 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1958677 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 1958736 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 1958737 ATACTATCGAGGA 1958749 >seq1141 Length=1085367 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 653456 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 653397 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 653396 TACTATCGAGGA 653385 >seq1153 Length=2037154 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 42996 TTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATG 43055 ||||| || |||||||| | || ||| || | || || ||||| || || ||||| ||| Sbjct 1923961 TTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGATG 1924020 Query 43056 AGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC 43115 |||||||| || || | ||| | | |||||||||| ||| || |||| || | Sbjct 1924021 AGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCG 1924080 Query 43116 ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAG 43175 | || || | || || |||| || |||||||| ||||| || || || || ||| Sbjct 1924081 ATGGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTAAGGGTTTTCACGAAG 1924140 Query 43176 ATTTGCAT 43183 || ||||| Sbjct 1924141 ATCTGCAT 1924148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571806521034000