Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1181 104 2e-17 seq1163 102 6e-17 seq1153 87.8 1e-12 >seq1181 Length=949089 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | | ||| || ||||| |||| ||| ||||||||||| |||||||| Sbjct 810066 CCACCGCGAAGTCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAA 810125 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| ||| |||| || |||||||| |||||||| ||||||| || ||||| || || Sbjct 810126 AGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTTTGCTGGTCCGGTGGG 810185 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||||||| |||||| || || | | | ||||| | || || Sbjct 810186 ATTCCTTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATCGTGTCCGACGCTTCGACT 810245 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || || || || || || || || ||||| |||||||| Sbjct 810246 TCCAAAGTGATTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 810292 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45122 CTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG 45181 || || ||||| |||| ||| ||||||||||| |||||||| ||| ||| || Sbjct 810534 CTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAAAGTGTACGACCG 810593 Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || || |||||||| |||||||| ||||||| ||| ||||| || || | || |||||| Sbjct 810594 TCTTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATTCCTTCCTTG 810653 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 ||| |||||| || || | | | | ||| | || || |||| || || Sbjct 810654 TCCTGAATTTTGGCTTTGACATTCTCGATCGTATCCGACGCTTCGACTTCCAAAGTGATT 810713 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || || || || ||||| |||||||| Sbjct 810714 GTTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 810748 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | | ||| || ||||| |||| ||| ||||||||||| |||||||| Sbjct 810294 CCACCGCGAAGTCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAA 810353 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| ||| |||| || |||||||| |||||||| ||||||| || ||||| || || Sbjct 810354 AGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTTTGCTGGTCCGGTGGG 810413 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||||||| |||||| || || | | | | ||| | || || Sbjct 810414 ATTCCTTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATCGTATCCGACGCTTCGACT 810473 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || || || || || || || || ||||| |||||||| Sbjct 810474 TCCAAAGTGATTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 810520 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| |||| || ||||||||||| || ||||| ||| |||| | || || Sbjct 810996 ACCAAATGCAAGGTAGATTCCTTCTGAATATTATAGTCAGAAAGTGTGCGACCATCTTCA 811055 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||||||||||||||| || |||| ||| ||||| ||||| | || ||||| || | Sbjct 811056 AGTTGTTTTCCGGCGAAGATTAACCTCTGCTGGTCCGGAGGAATTCCTTCCTTATCTTGA 811115 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| || || | | | ||||| | || || |||| || || || || Sbjct 811116 ATTTTGGCTTTGACATTCTCAATCGTGTCCGACGCTTCGACTTCCAAAGTGATTGTTTTA 811175 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || || ||||| |||||||| Sbjct 811176 CCGGTAAGCGTTTTAACAAAAATTTGCAT 811204 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 45122 CTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG 45181 || |||||||| |||| || ||||||||||| || ||||| ||| |||| | Sbjct 811218 CTCAATACCAAATGCAAGGTAGATTCCTTCTGAATATTATAGTCAGAAAGTGTGCGACCA 811277 Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || || ||||||||||||||||| ||||| | ||| || || || || | || || ||| Sbjct 811278 TCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGGGGGATTCCTTCTTTG 811337 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 | |||||| ||| || | | | |||| |||| | |||| || || Sbjct 811338 TATTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGACGCCTCAATTTCCAACGTGATG 811397 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || ||||| || || ||||| || ||||| Sbjct 811398 GTCTTTCCTGTCAGGGTTTTGACAAAAATCTGCAT 811432 >seq1163 Length=8263949 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| |||||| || |||||||||||||||||| || | | || ||| Sbjct 3692846 ACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGAAAGAGTTCTGCCATCTTCC 3692905 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | |||||| |||||||| |||| |||||||| || || || | ||||| |||||| | Sbjct 3692906 AATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTTGTCCTGA 3692965 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | |||| | | || || || | |||||| || || Sbjct 3692966 ATTTTAGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGACTTCGAGGGTAATGGTTTTA 3693025 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || ||||| ||||| || |||||||| Sbjct 3693026 CCAGTGAGAGTTTTCACGAAAATTTGCAT 3693054 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| |||||| || |||||||||||||| ||| || | | | || ||| Sbjct 3693074 ACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAATCGGAAAGAGTTCTACCATCTTCC 3693133 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | |||||| |||||||| |||| |||||||| || || || | ||||| |||||| | Sbjct 3693134 AATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTTGTCCTGA 3693193 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | |||| | || || || | ||| || || || Sbjct 3693194 ATTTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCAAGGGTGATGGTTTTA 3693253 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| |||||||| |||||||| |||||| Sbjct 3693254 CCCGTAAGAGTCTTTACAAAGATCTGCATG 3693283 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| |||||| || |||||||||||||||||| || | | | || ||| Sbjct 3692618 ACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGAAAGAGTTCTACCATCTTCC 3692677 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | |||||| |||||||| |||| |||||||| || || || | ||||| |||||| | Sbjct 3692678 AATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTTGTCCTGA 3692737 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | |||| | || || || | ||| || || || Sbjct 3692738 ATTTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCAAGGGTGATGGTTTTA 3692797 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || ||||| ||||| ||||||||||| Sbjct 3692798 CCGGTGAGAGTTTTCACGAAGATTTGCAT 3692826 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 45121 TCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATC 45180 || ||| || ||||| || ||| || || || |||||||| || || | | Sbjct 3691699 TCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCC 3691758 Query 45181 GTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTT 45240 || ||||||||||| |||||||| |||| |||||||| || || || | ||||| || Sbjct 3691759 ATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTT 3691818 Query 45241 GTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAAT 45300 |||| |||||| ||| || | | | |||| | | || || || | |||||| Sbjct 3691819 GTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGACTTCGAGGGTAAT 3691878 Query 45301 CGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || ||||| ||||| || |||||||| Sbjct 3691879 GGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 3691914 >seq1153 Length=2037154 Score = 87.8 bits (96), Expect = 1e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 45123 TTAATACCAAGTGCAGCGTGCTCTCCTTCT-GAATGTTGTAGTCGTTCAGTTGGCGATCG 45181 |||||| || || || | | | | |||| | | |||||||| ||| || ||| | Sbjct 1923935 TTAATATCAGGTACA-CATCCGCACCTTTTTGGATGTTGTAATCGGACAAAGTGCGTCCA 1923993 Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || ||||| ||||| |||||||| || | |||||||| || || || | ||||||||| Sbjct 1923994 TCCTCCAGCTGTTTGCCGGCGAAGATGAGTCGCTGTTGATCTGGCGGAATTCCCTCCTTG 1924053 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 ||| || || ||| || | | | | | || |||| ||||| | |||||| Sbjct 1924054 TCCTGGATCTTAGCCTTGACATTCTCGATGGTATCAGAGGCCTCTACCTCGAGGGTAATG 1924113 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 || || ||||| || || ||||| ||||| |||||| || || Sbjct 1924114 GTTTTACCCGTAAGGGTTTTCACGAAGATCTGCATGGTGGCT 1924155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395067736782550