Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1238 93.3 4e-14 >seq1238 Length=3292682 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/193 (71%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 14443 AAATAAATG-TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 14501 ||||| || || ||| ||||| | | ||||| || || ||||| || || ||||| Sbjct 3273211 AAATATATTCTTACTTTTCTTTTGGATCAGAAATATAAGTTTCAATGAGCAAAGAATACA 3273270 Query 14502 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACC 14561 | ||||| || || ||||| || || || ||||| ||||| ||||| | ||||| || Sbjct 3273271 TCTCAGAATGAATATTTTCTATGGCAATTTGAAAGCCATAGAAACAACGTGCTTCGGAAA 3273330 Query 14562 ATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14621 || || ||| | ||||| || | ||| |||||||| |||||||| ||| | Sbjct 3273331 TTTTCACTTCTTGGCTGAATCTCTCAATTAGATTCTCATTAACGATACCATCGGAAGCGG 3273390 Query 14622 CAAAAAATGCCAA 14634 |||||||||| || Sbjct 3273391 CAAAAAATGCTAA 3273403 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 14240 ATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATT 14299 ||||||||||| || || | |||||||| | ||||||||| |||| |||||| || Sbjct 3271997 ATAAGTTCGTTGCTGAAGGTGAGACCTGGCATGACTCCTCGTTTCTTTAGCCAAAAAATG 3272056 Query 14300 GCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCT 14359 || ||||| || ||||| || ||||||||||| ||||| || | || ||||| Sbjct 3272057 GCTGCGAAACTGCCACTGAAGAAGATACCCTCAACTGCCGCAAATGCGACTACACGTTCG 3272116 Query 14360 CCAAACG--ATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAA 14417 ||||| ||| | || | | ||||| ||| ||||| | || || || || | Sbjct 3272117 GGAAACGTAGCGCTCTCATGATTG--ATCCAGTTTAATGCCCAATTAGCCTTCTTCTTGA 3272174 Query 14418 TAAAATCCATTGTTTCAATAGCATTAAATAA 14448 | || | ||| ||||| ||||||||||| Sbjct 3272175 CACAAGGAAGTGTCTCAATCGCATTAAATAA 3272205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482336254554000