Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1163 132 4e-26 seq1238 100 3e-16 seq1181 93.3 4e-14 seq246 87.8 2e-12 >seq1163 Length=8263949 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || ||||||||||| || || ||||| |||||| | || |||||| | || Sbjct 3693283 CATGCAGATCTTTGTAAAGACTCTTACGGGTAAAACCATCACCCTTGAAGTTGAAGCCTC 3693224 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| || || | ||| |||||| || || | || || || || Sbjct 3693223 TGACACAATAGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATCA 3693164 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||||| || ||||| |||||||| |||||||| || ||| | |||||| || Sbjct 3693163 ACAGCGTCTGATTTTCGCCGGCAAACAATTGGAAGATGGTAGAACTCTTTCCGATTACAA 3693104 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| |||||||| || ||||| ||||| || Sbjct 3693103 CATTCAGAAAGAATCCACGCTTCACCTGGTTCT 3693071 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || ||||| || || ||||| || ||| |||| || ||| | || Sbjct 3693054 ATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTCA 3692995 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| || || | ||| |||||| || || | || || || || Sbjct 3692994 GACACCATCGAAAACGTAAAGGCTAAAATTCAGGACAAAGAGGGAATTCCACCGGATCAA 3692935 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| |||||||| |||||||| | ||| | ||| || ||| Sbjct 3692934 CAGCGTCTGATTTTCGCCGGCAAACAATTGGAAGATGGCAGAACTCTTTCCGACTACAAC 3692875 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| |||||||| || ||||| ||||| || Sbjct 3692874 ATTCAGAAAGAATCCACGCTTCACCTGGTTCT 3692843 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || ||||| || || ||||| || || |||| || ||| | || Sbjct 3692142 ATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATTACTCTCGAAGTCGAAGCTTCA 3692083 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||||| || ||| | ||| ||| || ||||| | || || || || Sbjct 3692082 GACACTATCGAAAACGTAAAAGCCAAAATCCAGGATAAAGAAGGAATTCCACCGGATCAA 3692023 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| || ||||| ||||||| | ||| | ||| || ||| Sbjct 3692022 CAGCGTCTGATTTTCGCCGGTAAACAACTGGAAGATGGCAGAACTCTTTCCGACTACAAC 3691963 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||||||||| || ||||| ||||| || Sbjct 3691962 ATTCAAAAAGAATCTACACTTCACCTGGTTCT 3691931 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || ||||| || || ||||| || || |||| || ||| | || Sbjct 3692370 ATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATTACTCTCGAAGTCGAAGCTTCA 3692311 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||||| || ||| | ||| ||| || ||||| | || || || || Sbjct 3692310 GACACTATCGAAAACGTAAAAGCCAAAATCCAGGATAAAGAAGGAATTCCACCGGATCAA 3692251 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| || ||||| ||||||| | ||| | ||| || ||| Sbjct 3692250 CAGCGTCTGATTTTCGCCGGTAAACAACTGGAAGATGGCAGAACTCTTTCCGACTACAAC 3692191 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||||||||| || ||||| ||||| || Sbjct 3692190 ATTCAAAAAGAATCTACACTTCACCTGGTTCT 3692159 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || ||||| || || ||||| || || |||| || ||| | || Sbjct 3692598 ATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACTATTACTCTCGAAGTCGAAGCTTCA 3692539 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||||| || ||| | ||| ||| || ||||| | || || || || Sbjct 3692538 GACACTATCGAAAACGTAAAAGCCAAAATCCAGGATAAAGAAGGAATTCCACCGGATCAA 3692479 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| || ||||| ||||||| | ||| | ||| || ||| Sbjct 3692478 CAGCGTCTGATTTTCGCCGGTAAACAACTGGAAGATGGCAGAACTCTTTCCGACTACAAC 3692419 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||||||||| || ||||| ||||| || Sbjct 3692418 ATTCAAAAAGAATCCACACTTCACCTGGTTCT 3692387 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || ||||| || || ||||| || ||| |||| || ||| | || Sbjct 3691914 ATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTCA 3691855 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| || || | ||| |||||| || || | || || || || Sbjct 3691854 GACACCATCGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATCAA 3691795 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| |||||||| ||||||| | ||| | ||||| ||| Sbjct 3691794 CAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACAAC 3691735 Query 31373 ATTCAAAAAGAATCGACTCTTCA 31395 || ||||||||||| || || || Sbjct 3691734 ATCCAAAAAGAATCCACACTCCA 3691712 >seq1238 Length=3292682 Score = 100 bits (110), Expect = 3e-16 Identities = 132/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 57671 GAGAAA--TTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAAC 57728 |||||| |||||| || || || || ||||| ||||| ||||||||||| ||||| Sbjct 3273427 GAGAAACGTTTTATCTCTCATGTTTTAGCATTTTTTGCCGCTTCCGATGGTATCGTTAAT 3273368 Query 57729 GAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTAC 57788 |||||| | | || ||||| ||||||||| || | | || || | || || || Sbjct 3273367 GAGAATCTAATTGAGAGATTCAGCCAAGAAGTGAAAATTTCCGAAGCACGTTGTTTCTAT 3273308 Query 57789 GGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACG 57848 || |||||| | ||||| ||||| | ||||| || |||||||| | ||||| || || Sbjct 3273307 GGCTTTCAAATTGCCATAGAAAATATTCATTCTGAGATGTATTCTTTGCTCATTGAAACT 3273248 Query 57849 TA 57850 || Sbjct 3273247 TA 3273246 >seq1181 Length=949089 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || || || || || ||||| ||||| | || || ||| |||| Sbjct 810064 ATGCAAATTTTTGTCAAAACGCTTACCGGTAAAACAATCACTTTGGAAGTCGAAGCGTCG 810005 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | ||| ||||||||||| | || || ||||| Sbjct 810004 GACACGATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAAGGAATCCCACCGGACCAA 809945 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || ||||| || ||||| | |||||| | || | || ||||| Sbjct 809944 CAGAGGTTGATCTTCGCCGGGAAACAACTTGAAGACGGTCGTACACTTTCTGACTATAAT 809885 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| |||||||| || | ||| |||| | || || | ||||||| Sbjct 809884 ATTCAGAAAGAATCCACATTGCATTTGGTTTTGAGGCTTCGCGGCGGTA 809836 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| ||||||| || || ||||| | || ||||| |||| Sbjct 810976 ATGCAGATTTTTGTCAAGACATTGACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCA 810917 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| | |||||| | ||| |||||||||||| | || || |||||| Sbjct 810916 GATACTATCGAGAATGTCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCACCGGACCAG 810857 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || ||||| || ||||| | |||||| | || | || || || Sbjct 810856 CAGAGGTTGATCTTCGCCGGGAAACAACTTGAAGACGGTCGTACACTTTCTGACTACAAT 810797 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||||||| ||||| || | ||| |||| Sbjct 810796 ATTCAAAAGGAATCCACATTGCATTTGGT 810768 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || || || || || ||||| ||||| | || || ||| |||| Sbjct 810292 ATGCAAATTTTTGTCAAAACGCTTACCGGTAAAACAATCACTTTGGAAGTCGAAGCGTCG 810233 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | ||| |||||||||||| | || || |||||| Sbjct 810232 GACACGATCGAGAATGTCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCACCGGACCAG 810173 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || ||||| || ||||| | |||||| | || | || || || Sbjct 810172 CAAAGGTTGATCTTCGCCGGGAAACAACTTGAAGACGGTCGTACACTTTCTGACTACAAT 810113 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || ||||| || | ||| |||| | ||||| | || |||| Sbjct 810112 ATTCAGAAGGAATCCACATTGCATTTGGTTTTGAGACTTCGCGGTGGTA 810064 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || || || || || ||||| ||||| | || || ||| |||| Sbjct 810520 ATGCAAATTTTTGTCAAAACGCTTACCGGTAAAACAATCACTTTGGAAGTCGAAGCGTCG 810461 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | |||||| | ||| |||||||||||| | || || |||||| Sbjct 810460 GATACGATCGAGAATGTCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCACCGGACCAG 810401 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || ||||| || ||||| | |||||| | || | || || || Sbjct 810400 CAAAGGTTGATCTTCGCCGGGAAACAACTTGAAGACGGTCGTACACTTTCTGACTACAAT 810341 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || ||||| || | ||| |||| | ||||| | || |||| Sbjct 810340 ATTCAGAAGGAATCCACATTGCATTTGGTTTTGAGACTTCGCGGTGGTA 810292 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || || || || || ||||| ||||| | || || ||| |||| Sbjct 810748 ATGCAAATTTTTGTCAAAACGCTTACCGGTAAAACAATCACTTTGGAAGTCGAAGCGTCG 810689 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | |||||| | ||| |||||||||||| | || || |||||| Sbjct 810688 GATACGATCGAGAATGTCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCACCGGACCAG 810629 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || ||||| || ||||| | |||||| | || | || || || Sbjct 810628 CAGAGGTTGATCTTCGCCGGGAAACAACTTGAAGACGGTCGTACACTTTCTGACTACAAT 810569 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| || ||||| || | ||| |||| Sbjct 810568 ATTCAGAAGGAATCCACATTGCATTTGGT 810540 >seq246 Length=259 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| ||||||| || || ||||| | || ||||| |||| Sbjct 83 ATGCAGATTTTTGTCAAGACATTGACAGGAAAGACCATCACGTTGGAAGTTGAGGCGTCA 142 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| | |||||| | ||| |||||||||||| | || || |||||| Sbjct 143 GATACTATCGAGAATGTCAAAGCCAAAATTCAGGACAAGGAAGGAATCCCACCAGACCAG 202 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 ||| | | || ||||| || ||||| | |||||| Sbjct 203 CAGAGGTTGATCTTCGCCGGGAAACAACTTGAAGAC 238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445757763276000