Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1170 109 7e-19 seq1492 98.7 1e-15 >seq1170 Length=7610050 Score = 109 bits (120), Expect = 7e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 ||||||| | ||| ||||| |||||||||||||| ||||| || ||||| || |||| Sbjct 7500298 CACTAAAAACTTTCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGG 7500239 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 | |||||||| |||||||| || | ||| ||||| |||| ||||||| | | |||| Sbjct 7500238 TTGCATAATCTGGATGTTGATTAATCATAGTCGCTGCAGTTTCAGCTGCCAAATTATCCA 7500179 Query 64126 ATTCTACCGTTGTTACTCCA 64145 |||| ||||| |||||| Sbjct 7500178 ATTCACTTGTTGTCACTCCA 7500159 >seq1492 Length=1263116 Score = 98.7 bits (108), Expect = 1e-15 Identities = 180/259 (69%), Gaps = 6/259 (2%) Strand=Plus/Plus Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701 || ||||| || ||| | |||| | |||||||||| || || ||||| || ||||| Sbjct 356879 CTGGACATCTGCTGATTATTAGTACAAGCATTAAATAGAGTTGGTGAAGCATGTGTAAAA 356938 Query 63702 CATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63760 || |||||| || || ||| || || || || || || || || || |||||| Sbjct 356939 TATCGTTCAGACAAATA-ATTATATGTTTCTATGACTTTATCAATGTCATTTTCATGAAT 356997 Query 63761 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTT 63820 || || || || | ||| ||||| || ||||| || || || || || || ||||| Sbjct 356998 ACCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCATTGATTTT 357057 Query 63821 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGT 63878 || || ||| | | || | ||||||||||||| ||| || || ||||| || || Sbjct 357058 CAGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAA--TCACGA 357115 Query 63879 TCGTAAATAATAACCGAAT 63897 ||||| || ||| | |||| Sbjct 357116 TCGTATATTATAGCAGAAT 357134 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 ||||||| ||| || ||||||||||||||||| |||| | | ||||| || ||||| | Sbjct 357355 CACTAAAACTTTTCTTGGTTTCCTTGTGTAGATTAGATACGTCAATTCTTGCAGCTAGTA 357414 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 | |||||||| ||||||| || | || || || |||| ||||||||| | || | Sbjct 357415 TAGCATAATCAGGATGTTTAGTTGCCATTGTAGCAGCAGTTTCAGCTGCCAGATTATCAA 357474 Query 64126 ATTCTACCGTTGTTACTCCATTATATA 64152 | || || ||||||||| ||||| Sbjct 357475 GTATAACTGTAGTTACTCCAGAATATA 357501 Score = 93.3 bits (102), Expect = 5e-14 Identities = 170/249 (68%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 62325 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTA 62384 ||||| || || || | ||||| ||| ||||||| ||| || | ||| || || Sbjct 355143 TTCTTCATATCTTCGTCCCATAGACCTCTACTGGTTAAATCTCGCAGTAAATGTGGATTG 355202 Query 62385 ACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62444 || | ||||||||||||||||| | || || ||||| || ||||||||||| Sbjct 355203 ACAATGATAAATTCTCCAGACAATACGCGCCTCACATATATATTGCTTGTATACGGTTCA 355262 Query 62445 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62504 | || || || ||||| ||||| || || || || || || ||||||||||| | || Sbjct 355263 ATGGATTCGTTGTTTCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAA 355322 Query 62505 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGA 62564 | | |||||| | |||| | | ||| || |||| | | ||||||| ||| | | Sbjct 355323 AGAGAATTTCTTACTCCGTGTTTCGCGATCTTCGCTTTCAATTCATCCCAATCCCATAAA 355382 Query 62565 TCCGACGGT 62573 | | |||| Sbjct 355383 TTTGTCGGT 355391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629805397284000