Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1492 158 1e-33 seq1238 96.9 3e-15 seq1170 87.8 2e-12 >seq1492 Length=1263116 Score = 158 bits (174), Expect = 1e-33 Identities = 204/280 (73%), Gaps = 4/280 (1%) Strand=Plus/Plus Query 37075 TTCTTTATGTCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTT 37134 ||||| || || | | ||| | | |||||| ||| |||| || || |||||||| Sbjct 355143 TTCTTCATATCTTCGTCCCATAGACCTCTACTGGTTAAATCTCGCAGTAAATGTGGATTG 355202 Query 37135 ACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCA 37194 |||| ||| |||||||| ||||| | || |||||||||||| ||||| |||||| Sbjct 355203 ACAATGATAAATTCTCCAGACAATACGCGCCTCACATATATATTGCTTGTATACGGTTCA 355262 Query 37195 ATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGA 37254 ||||| || || || | ||| || || | || || || || ||||| |||||||||| | Sbjct 355263 ATGGATTCGTTGTTTCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAA 355322 Query 37255 AGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAA 37314 || |||||| | ||| ||| | || || ||| | ||||| ||||||||||||| Sbjct 355323 AGAGAATTTCTTACTCCGTGTTTCGCGATCTTCGCTTTCAATTCATCCCAATCCCATAAA 355382 Query 37315 TCTGTTGGGTT--CTTTAACCACATATCATATTGTAGAAT 37352 | ||| || || | || ||||||||||||||| ||||| Sbjct 355383 TTTGTCGGTTTAACGTT--CCACATATCATATTGGAGAAT 355420 Score = 109 bits (120), Expect = 5e-19 Identities = 156/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 38419 GCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTT 38478 || ||||||| || || || |||||| | || || ||| |||||||||||||||||| Sbjct 356906 GCATTAAATAGAGTTGGTGAAGCATGTGTAAAATATCGTTCAGACAAATAATTATATGTT 356965 Query 38479 TCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGT 38538 ||||| || | ||| || ||| | |||||||| | || ||| ||||| | ||||||| Sbjct 356966 TCTATGACTTTATCAATGTCATTTTCATGAATACCAACAGCTACTCTCATCAACATATGT 357025 Query 38539 TGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTT 38598 || || || || | ||| ||| ||| ||| || || || | | || | ||||| Sbjct 357026 TGAGGCCTCTCGACTATCTTACCATTGATTTTCAGCAGGTAACTTCTCTCAAGCGTTTTA 357085 Query 38599 ATTCCAAAATAACTATA--TGAATAATCTCTATCGTAT 38634 | |||| |||| |||| ||| |||| | ||||||| Sbjct 357086 AAACCAATATAATTATAATTGA--AATCACGATCGTAT 357121 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/193 (70%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 37354 CCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTT---AGCTAGT 37410 |||||||| |||| | | | ||||| ||| |||| || | ||| ||||| | Sbjct 355489 CCTTTACTGACTGGGCTACCTTGATATGACTCGTAAGTACCCT---TTTCCGCAGCTAAT 355545 Query 37411 TCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATT 37470 |||||||||| ||||| ||| ||||||| | |||||||| |||| || || | | | Sbjct 355546 TCGCAACTAGCTTCTAAGGCGCCATAATAAAGCGTTTCGAAGATTTTAATGTTGAGTTCT 355605 Query 37471 TTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGA 37530 || |||| || ||| ||||| | ||| | || ||| | ||| |||| || | ||| || Sbjct 355606 TTCGCTTTTTTGCTCTCGAAGGGATATCGCATTAACAGGAACGCATCGGCTAGACCTTGT 355665 Query 37531 ACACCGATACCTA 37543 | || ||||||| Sbjct 355666 ATTCCTATACCTA 355678 >seq1238 Length=3292682 Score = 96.9 bits (106), Expect = 3e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 11899 ATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAA 11958 ||| || || || | ||| |||||| || |||||||||||||| || || |||||||| Sbjct 3273245 ATAAGTTTCAATGAGCAAAGAATACATCTCAGAATGAATATTTTCTATGGCAATTTGAAA 3273304 Query 11959 TCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATT 12018 ||||||||||| ||||| || ||| | || || ||||| || || ||| Sbjct 3273305 GCCATAGAAACAACGTGCTTCGGAAATTTTCACTTCTTGGCTGAATCTCTCAATTAGATT 3273364 Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAATGCTA 12056 |||||| || |||||||| || ||||||||||||| Sbjct 3273365 CTCATTAACGATACCATCGGAAGCGGCAAAAAATGCTA 3273402 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/236 (68%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 11417 TTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAAT 11476 || |||||||| || |||||| | ||||| | |||||||| ||||| || ||| Sbjct 3271668 TTTTATACATT----ACCTTTTCAAATCCTAATGCAACGAATAATCTGTCTGCAACAAAT 3271723 Query 11477 TCTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACT 11536 || || || | | |||| || | |||||| ||||| || || ||||| | || Sbjct 3271724 TCGATGTAATTACACATGAATGTGCGATTCATTCCTATTAGTTCAACCGGCAATGCTTGC 3271783 Query 11537 GTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTA 11596 |||||||| |||||||| || | || || || || | || || | | | || Sbjct 3271784 GTCAAAAATTCCTTTTCAATTTCTACGGCGTCCATTACAATTGATTTCACACGCTCAAAC 3271843 Query 11597 GATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACC 11652 ||||| |||| | ||||||||||| ||||| || ||||| |||||||| || Sbjct 3271844 GATGGCTTTTGTACGATGTGTTTAAACATCAAACAGGCGAAATCGCAATGTAATCC 3271899 >seq1170 Length=7610050 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 38440 GCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCA 38499 |||| |||||| ||| || ||||| | ||||||||||||| || || | ||| || || Sbjct 7500686 GCATATATGAAATATTGTTTCGACATAAAATTATATGTTTCAATAACCTTATCAATGTCT 7500627 Query 38500 CCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTA 38559 | || |||||| ||| || | | ||||| ||| || ||||||||||| | | ||| Sbjct 7500626 TCACCATGAATAGCTACAGCAATTCGCATTAACATGTGCTGTGGTCTTTCAACAACTTTT 7500567 Query 38560 TTATTCTGTTTAAGTAGATACGATTTTTCTAATG--TTTTTATTCCAAAATAACTATATG 38617 |||| ||| | |||| ||| ||| | | |||| | | | ||||||||| Sbjct 7500566 CCATTCAATTTCAACAGAT--GATCACTCTCAAGCATTTTAAATGTAGCATAACTATAAT 7500509 Query 38618 AATAATCTCTATCGTATGCTATTACA 38643 | |||||||||| ||| |||| || Sbjct 7500508 TAAAATCTCTATCATATAGTATTGCA 7500483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468515722332000