Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1492 104 3e-17 seq1170 104 3e-17 seq1238 84.2 3e-11 >seq1492 Length=1263116 Score = 104 bits (114), Expect = 3e-17 Identities = 187/269 (70%), Gaps = 6/269 (2%) Strand=Plus/Plus Query 66435 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 66494 || ||||| || ||| | |||| | |||||||||| || || ||||| || ||||| Sbjct 356879 CTGGACATCTGCTGATTATTAGTACAAGCATTAAATAGAGTTGGTGAAGCATGTGTAAAA 356938 Query 66495 CATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 66553 || |||||| || || ||| || || || || || || || || || |||||| Sbjct 356939 TATCGTTCAGACAAATA-ATTATATGTTTCTATGACTTTATCAATGTCATTTTCATGAAT 356997 Query 66554 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 66613 || || || || | ||| ||||| || ||||| || || || ||||| || ||||| Sbjct 356998 ACCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCATTGATTTT 357057 Query 66614 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGT 66671 || || ||| | | || | ||||||||||||| ||| || || ||||| || || Sbjct 357058 CAGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAA--TCACGA 357115 Query 66672 TCGTAAATAATAACCGAGTTGAGTTTATC 66700 ||||| || ||| | || | ||||| || Sbjct 357116 TCGTATATTATAGCAGAATCCAGTTTCTC 357144 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 65118 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 65177 ||||| || || || | ||||| ||| ||||||| ||| || | ||| ||||| Sbjct 355143 TTCTTCATATCTTCGTCCCATAGACCTCTACTGGTTAAATCTCGCAGTAAATGTGGATTG 355202 Query 65178 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 65237 || | |||||||||||||||||| | || || ||||| || ||||||||||| Sbjct 355203 ACAATGATAAATTCTCCAGACAATACGCGCCTCACATATATATTGCTTGTATACGGTTCA 355262 Query 65238 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 65297 | || || || ||||| ||||| || || || || || || ||||||||||| | || Sbjct 355263 ATGGATTCGTTGTTTCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAA 355322 Query 65298 AAACTATTTCTAAGACCGT 65316 | | |||||| | |||| Sbjct 355323 AGAGAATTTCTTACTCCGT 355341 Score = 89.7 bits (98), Expect = 7e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 ||||||| ||| || ||||| ||||||||||| |||||| | ||||| || |||| | Sbjct 357355 CACTAAAACTTTTCTTGGTTTCCTTGTGTAGATTAGATACGTCAATTCTTGCAGCTAGTA 357414 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | |||||||| ||||||| || | || || || |||| ||||||||| | || | Sbjct 357415 TAGCATAATCAGGATGTTTAGTTGCCATTGTAGCAGCAGTTTCAGCTGCCAGATTATCAA 357474 Query 66919 ATTCTACCGTTGTTACTCCATTATATA 66945 | || || ||||||||| ||||| Sbjct 357475 GTATAACTGTAGTTACTCCAGAATATA 357501 >seq1170 Length=7610050 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 ||||||| | ||| ||||| || ||||||||||| |||| || |||||||| |||| Sbjct 7500298 CACTAAAAACTTTCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGG 7500239 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | |||||||| |||||||| || | ||| ||||| |||| ||||||| | | |||| Sbjct 7500238 TTGCATAATCTGGATGTTGATTAATCATAGTCGCTGCAGTTTCAGCTGCCAAATTATCCA 7500179 Query 66919 ATTCTACCGTTGTTACTCCA 66938 |||| ||||| |||||| Sbjct 7500178 ATTCACTTGTTGTCACTCCA 7500159 >seq1238 Length=3292682 Score = 84.2 bits (92), Expect = 3e-11 Identities = 142/203 (70%), Gaps = 7/203 (3%) Strand=Plus/Plus Query 36199 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC 36258 ||||||| || ||||| || ||||| | || || || || |||||||| |||| || Sbjct 3272002 TTCGTTGCTGAAGGTGAGACCTGGCATGACTCCTCGTTTCTTTAGCCAAAAAATGGCTGC 3272061 Query 36259 AAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA 36318 || ||| ||||| || || || ||||||||||| || | | | | || | Sbjct 3272062 GAAACTGCCACTGAAGAAGATACCCTCAACTGCCGCAAATGCGACTA--CACGTTCGGGA 3272119 Query 36319 ACCG--GCACTGTCATG---TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAA 36373 | || || || ||||| ||||| ||| ||||||| |||||||| || |||||| Sbjct 3272120 AACGTAGCGCTCTCATGATTGATCCAGTTTAATGCCCAATTAGCCTTCTTCTTGACACAA 3272179 Query 36374 GGCATTGTCTCTATAGCATTAAA 36396 || | |||||| || |||||||| Sbjct 3272180 GGAAGTGTCTCAATCGCATTAAA 3272202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658160047902000