Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1163 113 4e-20 seq1181 102 8e-17 >seq1163 Length=8263949 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||||| ||| | ||||| ||||| |||||||||||||| || ||| Sbjct 3691916 CCTCCTCGAAGACGCAGAACCAGGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 3691975 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| || |||||||| || | |||||||| || ||||| || || Sbjct 3691976 AGAGTTCTGCCATCTTCCAGTTGTTTACCGGCGAAAATCAGACGCTGTTGATCCGGTGGA 3692035 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || |||||||| || |||||| ||||| | ||| | ||||| | | || || Sbjct 3692036 ATTCCTTCTTTATCCTGGATTTTGGCTTTTACGTTTTCGATAGTGTCTGAAGCTTCGACT 3692095 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || ||||| | ||||| ||||| |||||||| Sbjct 3692096 TCGAGAGTAATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3692142 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||||| ||| | ||||| ||||| |||||||||||||| || ||| Sbjct 3692144 CCTCCTCGAAGACGCAGAACCAGGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 3692203 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| || |||||||| || | |||||||| || ||||| || || Sbjct 3692204 AGAGTTCTGCCATCTTCCAGTTGTTTACCGGCGAAAATCAGACGCTGTTGATCCGGTGGA 3692263 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || |||||||| || |||||| ||||| | ||| | ||||| | | || || Sbjct 3692264 ATTCCTTCTTTATCCTGGATTTTGGCTTTTACGTTTTCGATAGTGTCTGAAGCTTCGACT 3692323 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || ||||| | ||||| ||||| |||||||| Sbjct 3692324 TCGAGAGTAATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3692370 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||||| ||| | ||||| || || |||||||||||||| || ||| Sbjct 3692372 CCTCCTCGAAGACGCAGAACCAGGTGAAGTGTGGATTCTTTTTGAATGTTGTAGTCGGAA 3692431 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| || |||||||| || | |||||||| || ||||| || || Sbjct 3692432 AGAGTTCTGCCATCTTCCAGTTGTTTACCGGCGAAAATCAGACGCTGTTGATCCGGTGGA 3692491 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || |||||||| || |||||| ||||| | ||| | ||||| | | || || Sbjct 3692492 ATTCCTTCTTTATCCTGGATTTTGGCTTTTACGTTTTCGATAGTGTCTGAAGCTTCGACT 3692551 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || ||||| | ||||| ||||| |||||||| Sbjct 3692552 TCGAGAGTAATAGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3692598 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 || ||||||||||| | || || |||||||| ||||| ||||| | || || Sbjct 3691700 CGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCCA 3691759 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| || ||||| || || | |||||||| || ||||| || || || || |||||| Sbjct 3691760 TCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTTG 3691819 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| |||| | |||| | ||| | ||||| | | || || || | ||| | Sbjct 3691820 TC-CTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGACTTCGAGGGTAAT 3691878 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || || | ||||| ||||| |||||||| Sbjct 3691879 GGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 3691914 >seq1181 Length=949089 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || || || |||||||| || ||||| || || | || | ||||| ||||| || || Sbjct 811692 GTGGATTCCTTTTGAATATTGTAATCAGACAAAGTACGTCCA-TCTTCCAGCTGCTTTCC 811750 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 |||| | |||| ||| |||||||| || || ||||||||||| || ||| ||| ||| Sbjct 811751 AGCAAATATCAAACGCTGCTGATCAGGTGGGATGCCTTCTTTATCCTGGATCTTTGCTTT 811810 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 || | || | ||||| | | ||| || |||| || | ||||| |||||||| || Sbjct 811811 TACGTTCTCGATGGTGTCAGAAGCCTCAACTTCAAGAGTTATGGTCTTCCCGGTCAATGT 811870 Query 139747 TTTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 811871 CTTCACGAAAATCTGCAT 811888 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | |||| || | || || ||||| |||||||||||||| Sbjct 811434 CCACCACGTAGACGGAGGACTAGATGCAATGTGGATTCTTTCTGAATGTTATAATCAGAA 811493 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| || ||||| |||||| |||||| | |||||||| || || Sbjct 811494 AGCGTACGGCCGTCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGG 811553 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| |||| | || | | ||| | ||||| | | ||| || Sbjct 811554 ATTCCTTCTTTGTC-TTGAATTTTGGCCTTGACATTTTCGATCGTGTCTGATGCCTCAAC 811612 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||| || |||| ||||| || || || ||||| Sbjct 811613 TTCCAATGTAATGGTCTTTCCTGTCAGGGTTTTGACAAAGATCTGCAT 811660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496054388760000