Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1492 132 7e-26 seq1170 113 6e-20 >seq1492 Length=1263116 Score = 132 bits (146), Expect = 7e-26 Identities = 196/278 (71%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 78997 TTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 79056 ||||| || ||||| | ||||| ||| ||||||| ||| || | ||| ||||| Sbjct 355143 TTCTTCATATCTTCGTCCCATAGACCTCTACTGGTTAAATCTCGCAGTAAATGTGGATTG 355202 Query 79057 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCC 79116 || | |||||||||||||||||| | || || ||||| || ||||| ||||| Sbjct 355203 ACAATGATAAATTCTCCAGACAATACGCGCCTCACATATATATTGCTTGTATACGGTTCA 355262 Query 79117 ACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAAT 79176 | ||||| || ||||| ||||| || || || || ||||||||||||||||| | || Sbjct 355263 ATGGATTCGTTGTTTCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAA 355322 Query 79177 AAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGA 79236 | | |||||| | |||| | ||| || |||| | ||||||||||| | | Sbjct 355323 AGAGAATTTCTTACTCCGTGTTTCGCGATCTTCGCTTTCAATTCATCCCAATCCCATAAA 355382 Query 79237 TCAGACGGGACAACATTCCAAAGATCATATTGTAGAAT 79274 | | ||| ||| ||||| | ||||||||| ||||| Sbjct 355383 TTTGTCGGTTTAACGTTCCACATATCATATTGGAGAAT 355420 Score = 113 bits (124), Expect = 6e-20 Identities = 187/268 (70%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373 || ||||| || ||| | |||| | |||||||||| || || ||||| || ||||| Sbjct 356879 CTGGACATCTGCTGATTATTAGTACAAGCATTAAATAGAGTTGGTGAAGCATGTGTAAAA 356938 Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATT 80433 || |||||||| ||| || || || || || || || || || |||||| Sbjct 356939 TATCGTTCAGACAAATAATTATATGTTTCTATGACTTTATCAATGTCATTTTCATGAATA 356998 Query 80434 CCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 80493 || || || || | ||| ||||| || ||||| || || || ||||| ||| |||||| Sbjct 356999 CCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCATTGATTTTC 357058 Query 80494 AACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTT 80551 | || |||| | | || | ||||||||||||| ||| || || ||||| || || | Sbjct 357059 AGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAA--TCACGAT 357116 Query 80552 CGTAAATAATAACCGAGTTGAGTTTATC 80579 |||| || ||| | || | ||||| || Sbjct 357117 CGTATATTATAGCAGAATCCAGTTTCTC 357144 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 ||||||| ||| || ||||||||||||||||| |||||| | ||||| || |||| | Sbjct 357355 CACTAAAACTTTTCTTGGTTTCCTTGTGTAGATTAGATACGTCAATTCTTGCAGCTAGTA 357414 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 | |||||||| ||||||| || | || || || |||| ||||||||| | || | Sbjct 357415 TAGCATAATCAGGATGTTTAGTTGCCATTGTAGCAGCAGTTTCAGCTGCCAGATTATCAA 357474 Query 80798 ATTCTACCGTTGTTACTCCATTATATA 80824 | || || ||||||||| ||||| Sbjct 357475 GTATAACTGTAGTTACTCCAGAATATA 357501 >seq1170 Length=7610050 Score = 113 bits (124), Expect = 6e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 ||||||| | ||| ||||| |||||||||||||| |||| || ||||| || ||||| Sbjct 7500298 CACTAAAAACTTTCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGG 7500239 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 | ||||||||||||||||| || | ||| ||||| |||| ||||||| | | |||| Sbjct 7500238 TTGCATAATCTGGATGTTGATTAATCATAGTCGCTGCAGTTTCAGCTGCCAAATTATCCA 7500179 Query 80798 ATTCTACCGTTGTTACTCCA 80817 |||| ||||| |||||| Sbjct 7500178 ATTCACTTGTTGTCACTCCA 7500159 Score = 93.3 bits (102), Expect = 6e-14 Identities = 118/161 (73%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 79306 TCATAAGGTCCTTCCTTTTCG---GCTAATTCACAACTCGCCTCTAATGCTCCGTAATAA 79362 |||||||| |||| |||| |||| ||| ||||| || |||| || || ||||| Sbjct 7502088 TCATAAGGACCTT---TTTCAATAGCTATTTCGCAACTGGCTTCTAGAGCGCCATAATAG 7502032 Query 79363 ATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTT 79422 | || || ||||| | | || || || | |||||| ||| ||||||||||| | Sbjct 7502031 AGAGTCTCAAAAATTTGAATGTTAAGTTCATTAGCTTCTTTGCTTTCAAATGGATATCTC 7501972 Query 79423 AAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 79463 | | |||||| || |||||||||||||| ||||||||||| Sbjct 7501971 ATTAAAATAAATGCATCTGCTAATCCTTGTACACCAATACC 7501931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718254883542000