Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1238 87.8 2e-12 >seq1238 Length=3292682 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/193 (70%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 14111 AAATAAATA-TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACA 14169 ||||| || || ||| ||||| | | ||||| || || ||||| || || ||||| Sbjct 3273211 AAATATATTCTTACTTTTCTTTTGGATCAGAAATATAAGTTTCAATGAGCAAAGAATACA 3273270 Query 14170 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACC 14229 | ||||| || || ||||| || || || ||||| ||||| || || | ||||| || Sbjct 3273271 TCTCAGAATGAATATTTTCTATGGCAATTTGAAAGCCATAGAAACAACGTGCTTCGGAAA 3273330 Query 14230 ATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14289 || ||||| | ||||| || | ||| |||||||| |||||||| ||| | Sbjct 3273331 TTTTCACTTCTTGGCTGAATCTCTCAATTAGATTCTCATTAACGATACCATCGGAAGCGG 3273390 Query 14290 CAAAAAATGCCAA 14302 |||||||||| || Sbjct 3273391 CAAAAAATGCTAA 3273403 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 13908 ATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATT 13967 ||||||||||| || || | |||||||| | ||||||||| |||| |||||| || Sbjct 3271997 ATAAGTTCGTTGCTGAAGGTGAGACCTGGCATGACTCCTCGTTTCTTTAGCCAAAAAATG 3272056 Query 13968 GCAGC--AAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTT 14025 || || || || | | | ||||| || ||||||||||| ||||| || | || |||| Sbjct 3272057 GCTGCGAAACTGCCACTG--AAGAAGATACCCTCAACTGCCGCAAATGCGACTACACGTT 3272114 Query 14026 CTCCAAACG--ATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAttttttttt 14083 | ||||| ||| | || | | ||||| ||| ||||| | || || || || Sbjct 3272115 CGGGAAACGTAGCGCTCTCATGATTG--ATCCAGTTTAATGCCCAATTAGCCTTCTTCTT 3272172 Query 14084 AATAAAATCCATTGTTTCAATAGCATTAAATAA 14116 | | || | ||| ||||| ||||||||||| Sbjct 3272173 GACACAAGGAAGTGTCTCAATCGCATTAAATAA 3272205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479718705270000