Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1238 87.8 2e-12 >seq1238 Length=3292682 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 13908 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 13967 || ||| ||||| | | ||||| || || ||||| || || |||||| ||||| || Sbjct 3273221 TTACTTTTCTTTTGGATCAGAAATATAAGTTTCAATGAGCAAAGAATACATCTCAGAATG 3273280 Query 13968 TATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14027 || |||||||| || || ||||| ||||| ||||| | ||||| || || || || Sbjct 3273281 AATATTTTCTATGGCAATTTGAAAGCCATAGAAACAACGTGCTTCGGAAATTTTCACTTC 3273340 Query 14028 CGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGC 14087 | ||||| || | || |||||||| |||||||| ||| ||||||||||| Sbjct 3273341 TTGGCTGAATCTCTCAATTAGATTCTCATTAACGATACCATCGGAAGCGGCAAAAAATGC 3273400 Query 14088 CAA 14090 || Sbjct 3273401 TAA 3273403 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 13696 ATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATT 13755 ||||||||||| || || | |||||||| | ||||||||| |||| |||||| || Sbjct 3271997 ATAAGTTCGTTGCTGAAGGTGAGACCTGGCATGACTCCTCGTTTCTTTAGCCAAAAAATG 3272056 Query 13756 GCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCT 13815 || ||||| || ||||| || ||||||||||| ||||| || | || ||||| Sbjct 3272057 GCTGCGAAACTGCCACTGAAGAAGATACCCTCAACTGCCGCAAATGCGACTACACGTTCG 3272116 Query 13816 CCAAACG--ATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAA 13873 ||||| ||| | || ||| ||||| ||| ||||| | || || || || | Sbjct 3272117 GGAAACGTAGCGCTCTCATGATTG--ATCCAGTTTAATGCCCAATTAGCCTTCTTCTTGA 3272174 Query 13874 TAAAATCCATTGTTTCGATTGCATTGAATAA 13904 | || | ||| || || ||||| ||||| Sbjct 3272175 CACAAGGAAGTGTCTCAATCGCATTAAATAA 3272205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478579527342000