Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1163 109 4e-19 seq1181 98.7 8e-16 seq1153 87.8 1e-12 >seq1163 Length=8263949 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| |||| ||| || || |||| ||| || ||||| | |||||||| || Sbjct 3691688 CCTCCACGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAA 3691747 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || |||| |||||||||||| ||||||| ||||||||||| | || Sbjct 3691748 AGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGA 3691807 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || ||||| || ||| || | || || | | | ||||| ||| ||||| Sbjct 3691808 ATTCCCTCTTTGTC-CTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGAC 3691866 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||| || || ||||||||||| |||||||||||| Sbjct 3691867 TTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCATT 3691915 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | ||||| ||||| | || | | || |||| |||||| ||||| ||| Sbjct 3692408 TCTTTTTGAATGTTGTAGTCGGAAAGAGTTCTGCCATCTTCCAGTTGTTTACCGGCGAAA 3692467 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 |||| ||||||||||| | || | |||||||| || ||| |||| || | Sbjct 3692468 ATCAGACGCTGTTGATCCGGTGGAATTCCTTCTTTATCCTGGATTTTGGCTTTTACGTTT 3692527 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | ||||| ||| ||||| || | || |||||||| ||||| ||||||||||| Sbjct 3692528 TCGATAGTGTCTGAAGCTTCGACTTCGAGAGTAATAGTTTTACCGGTGAGAGTTTTCACG 3692587 Query 43099 AAAATTTGCATT 43110 || ||||||||| Sbjct 3692588 AAGATTTGCATT 3692599 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | ||||| ||||| | || | | || |||| |||||| ||||| ||| Sbjct 3691952 TCTTTTTGAATGTTGTAGTCGGAAAGAGTTCTGCCATCTTCCAGTTGTTTACCGGCGAAA 3692011 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 |||| ||||||||||| | || | |||||||| || ||| |||| || | Sbjct 3692012 ATCAGACGCTGTTGATCCGGTGGAATTCCTTCTTTATCCTGGATTTTGGCTTTTACGTTT 3692071 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | ||||| ||| ||||| || | || || ||||| ||||| ||||||||||| Sbjct 3692072 TCGATAGTGTCTGAAGCTTCGACTTCGAGAGTAATGGTTTTACCGGTGAGAGTTTTCACG 3692131 Query 43099 AAAATTTGCATT 43110 || ||||||||| Sbjct 3692132 AAGATTTGCATT 3692143 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | ||||| ||||| | || | | || |||| |||||| ||||| ||| Sbjct 3692180 TCTTTTTGAATGTTGTAGTCGGAAAGAGTTCTGCCATCTTCCAGTTGTTTACCGGCGAAA 3692239 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 |||| ||||||||||| | || | |||||||| || ||| |||| || | Sbjct 3692240 ATCAGACGCTGTTGATCCGGTGGAATTCCTTCTTTATCCTGGATTTTGGCTTTTACGTTT 3692299 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | ||||| ||| ||||| || | || || ||||| ||||| ||||||||||| Sbjct 3692300 TCGATAGTGTCTGAAGCTTCGACTTCGAGAGTAATGGTTTTACCGGTGAGAGTTTTCACG 3692359 Query 43099 AAAATTTGCATT 43110 || ||||||||| Sbjct 3692360 AAGATTTGCATT 3692371 Score = 93.3 bits (102), Expect = 3e-14 Identities = 132/182 (73%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 42931 TTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGT 42990 ||||| ||||| | || | | || ||||||||||||||||| ||||||| |||||| Sbjct 3692876 TTGTAGTCGGAAAGAGTTCTGCCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGT 3692935 Query 42991 TGATCGGCCGGCACACCTTCTTTTTCGCTGA--TCAACTCTTTGACTCTGCCAACTGTGT 43048 ||||| | || | || ||||| || |||| | | |||| || | | | |||| Sbjct 3692936 TGATCCGGTGGAATTCCCTCTTTGTC-CTGAATTTTAGCCTTT-ACGTTTTCGATGGTGT 3692993 Query 43049 CGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCA 43108 | ||| ||||| || | || || ||||| || || ||||||||||| |||||||||| Sbjct 3692994 CTGAAGCTTCGACTTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCA 3693053 Query 43109 TT 43110 || Sbjct 3693054 TT 3693055 Score = 86.0 bits (94), Expect = 5e-12 Identities = 129/181 (71%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 42931 TTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGT 42990 ||||| ||||| | || | | || ||||||||||||||||| ||||||| |||||| Sbjct 3692648 TTGTAGTCGGAAAGAGTTCTACCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGT 3692707 Query 42991 TGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTC 43049 ||||| | || | || ||||| || ||| || | || || | | | |||||| Sbjct 3692708 TGATCCGGTGGAATTCCCTCTTTGTC-CTGAATTTTGGCCTTTACGTTTTCTATTGTGTC 3692766 Query 43050 GCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || || || | || || ||||| ||||| ||||||||||| || |||||||| Sbjct 3692767 AGAGGCTTCAACTTCAAGGGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3692826 Query 43110 T 43110 | Sbjct 3692827 T 3692827 >seq1181 Length=949089 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || ||||| || |||||||| | ||| ||||| || | |||||| || || Sbjct 810066 CCACCGCGAAGTCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAA 810125 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| |||| || | |||||| ||||| || ||||| | || || || | || Sbjct 810126 AGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTTTGCTGGTCCGGTGGG 810185 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || |||| | ||||||| | | | ||||| || ||||| Sbjct 810186 ATTCCTTCCTTGTC-CTGAATTTTGGCTTTGACATTCTCGATCGTGTCCGACGCTTCGAC 810244 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| ||||| || ||||| |||||||||||||| Sbjct 810245 TTCCAAAGTGATTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 810292 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || ||||| || |||||||| | ||| ||||| || | |||||| || || Sbjct 810294 CCACCGCGAAGTCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAA 810353 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| |||| || | |||||| ||||| || ||||| | || || || | || Sbjct 810354 AGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTTTGCTGGTCCGGTGGG 810413 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || |||| | ||||||| | | | || || || ||||| Sbjct 810414 ATTCCTTCCTTGTC-CTGAATTTTGGCTTTGACATTCTCGATCGTATCCGACGCTTCGAC 810472 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| ||||| || ||||| |||||||||||||| Sbjct 810473 TTCCAAAGTGATTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 810520 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || || || || |||||||| | ||| ||||| || | |||||| || || Sbjct 810522 CCACCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAA 810581 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| |||| || | |||||| ||||| || ||||| | ||| || || | || Sbjct 810582 AGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGG 810641 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || |||| | ||||||| | | | || || || ||||| Sbjct 810642 ATTCCTTCCTTGTC-CTGAATTTTGGCTTTGACATTCTCGATCGTATCCGACGCTTCGAC 810700 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| ||||| || ||||| |||||||||||||| Sbjct 810701 TTCCAAAGTGATTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 810748 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || || || || |||||||| | ||| || || || | ||| || || || Sbjct 809838 CCGCCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCTTTCTGAATATTATAGTCAGAA 809897 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| |||| || | |||||| ||||| || ||||| | |||||| || | || Sbjct 809898 AGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGTTGGTCCGGTGGG 809957 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || || ||||||| | | | ||||| || ||||| Sbjct 809958 ATTCCTTCCTTGTCTTGAATTTTGGCTTTGACATTCTCGATCGTGTCCGACGCTTCGACT 810017 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| ||||| || ||||| |||||||||||||| Sbjct 810018 TCCAAAGTGATTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 810064 >seq1153 Length=2037154 Score = 87.8 bits (96), Expect = 1e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 42922 TTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATC 42981 ||||| | |||||||||||||| || ||| | || |||| ||||||||||| || || Sbjct 1923961 TTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGATG 1924020 Query 42982 AATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCA 43041 | |||||||||||| | ||| | || || || || |||| | ||||| | | Sbjct 1924021 AGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCG 1924080 Query 43042 ACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAA 43101 | || || ||||| || || | || || ||||| || || || |||||||| || Sbjct 1924081 ATGGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTAAGGGTTTTCACGAAG 1924140 Query 43102 ATTTGCAT 43109 || ||||| Sbjct 1924141 ATCTGCAT 1924148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381362395689900