Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1163 134 1e-26 seq1181 111 2e-19 >seq1163 Length=8263949 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | ||||| ||| | |||| ||||||||||||||| |||||||| ||| Sbjct 3691916 CCTCCTCGAAGACGCAGAACCAGGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 3691975 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| ||||||||||| || | |||||||| || ||||| || || Sbjct 3691976 AGAGTTCTGCCATCTTCCAGTTGTTTACCGGCGAAAATCAGACGCTGTTGATCCGGTGGA 3692035 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || ||||| ||||| | ||| | ||||| | | ||| ||| Sbjct 3692036 ATTCCTTCTTTATCCTGGATTTTGGCTTTTACGTTTTCGATAGTGTCTGAAGCTTCGACT 3692095 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || || ||||| | ||||| ||||| |||||||| Sbjct 3692096 TCGAGAGTAATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3692142 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | ||||| ||| | |||| ||||||||||||||| |||||||| ||| Sbjct 3692144 CCTCCTCGAAGACGCAGAACCAGGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 3692203 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| ||||||||||| || | |||||||| || ||||| || || Sbjct 3692204 AGAGTTCTGCCATCTTCCAGTTGTTTACCGGCGAAAATCAGACGCTGTTGATCCGGTGGA 3692263 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || ||||| ||||| | ||| | ||||| | | ||| ||| Sbjct 3692264 ATTCCTTCTTTATCCTGGATTTTGGCTTTTACGTTTTCGATAGTGTCTGAAGCTTCGACT 3692323 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || || ||||| | ||||| ||||| |||||||| Sbjct 3692324 TCGAGAGTAATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3692370 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | ||||| ||| | |||| ||| ||||||||||| |||||||| ||| Sbjct 3692372 CCTCCTCGAAGACGCAGAACCAGGTGAAGTGTGGATTCTTTTTGAATGTTGTAGTCGGAA 3692431 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| ||||||||||| || | |||||||| || ||||| || || Sbjct 3692432 AGAGTTCTGCCATCTTCCAGTTGTTTACCGGCGAAAATCAGACGCTGTTGATCCGGTGGA 3692491 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || ||||| ||||| | ||| | ||||| | | ||| ||| Sbjct 3692492 ATTCCTTCTTTATCCTGGATTTTGGCTTTTACGTTTTCGATAGTGTCTGAAGCTTCGACT 3692551 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | || || ||||| | ||||| ||||| |||||||| Sbjct 3692552 TCGAGAGTAATAGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3692598 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | || |||||||| || | ||| ||||||||||| ||||||||||| Sbjct 3691688 CCTCCACGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAA 3691747 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| |||||||| || || | |||||||| || ||||| || || Sbjct 3691748 AGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGA 3691807 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| |||||| |||| | ||| | ||||| | | ||| ||| Sbjct 3691808 ATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGACT 3691867 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || || | ||||| ||||| |||||||| Sbjct 3691868 TCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 3691914 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | ||||| ||| | |||| || |||||||| || |||||||||||| Sbjct 3693056 CCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAATCGGAA 3693115 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | |||||| || || | |||||||| || ||||| || || Sbjct 3693116 AGAGTTCTACCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGA 3693175 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| |||||| |||| | ||| | ||||| | || ||| ||| Sbjct 3693176 ATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAACT 3693235 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | || || || || | || ||||| || || ||||| Sbjct 3693236 TCAAGGGTGATGGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCAT 3693282 >seq1181 Length=949089 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTC 143034 || ||||| | || ||||| ||||| || |||||||| || || | || | ||||| Sbjct 811680 ACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATCAGACAAAGTACGTCCA-TCTTC 811738 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 || || || |||||| | |||| ||| |||||||| || || ||||||||||| || Sbjct 811739 CAGCTGCTTTCCAGCAAATATCAAACGCTGCTGATCAGGTGGGATGCCTTCTTTATCCTG 811798 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 || ||| ||||| | || | ||||| | | || ||||||| ||| | ||||| Sbjct 811799 GATCTTTGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCAACTTCAAGAGTTATGGTCTT 811858 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||||||| || ||||| || ||||| Sbjct 811859 CCCGGTCAATGTCTTCACGAAAATCTGCAT 811888 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| ||| | |||| ||| | ||| |||||||| || ||||| ||||| Sbjct 811434 CCACCACGTAGACGGAGGACTAGATGCAATGTGGATTCTTTCTGAATGTTATAATCAGAA 811493 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||| |||||||| |||||| |||||| | |||||||| || || Sbjct 811494 AGCGTACGGCCGTCTTCAAGTTGTTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGG 811553 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| |||||| || | | ||| | |||||| | | || ||| Sbjct 811554 ATTCCTTCTTTGTCTTGAATTTTGGCCTTGACATTTTCGATCGTGTCTGATGCCTCAACT 811613 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || |||| ||||| || || || ||||| Sbjct 811614 TCCAATGTAATGGTCTTTCCTGTCAGGGTTTTGACAAAGATCTGCAT 811660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507004576596000