Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1163 174 1e-38 seq1181 114 9e-21 seq1153 82.4 6e-11 >seq1163 Length=8263949 Score = 174 bits (192), Expect = 1e-38 Identities = 168/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 15148 TCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGC 15207 || ||||||||| || || ||||| |||||||| ||||||||||| ||| |||| | Sbjct 3691699 TCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCC 3691758 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 ||||| | ||||||||| ||| | |||| ||| ||||| || ||||||||| ||||| Sbjct 3691759 ATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTT 3691818 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 ||| ||||||| |||||| |||| ||||| || | ||| || || | |||||| Sbjct 3691819 GTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGACTTCGAGGGTAAT 3691878 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||||| || |||||||| || ||||||||||| Sbjct 3691879 GGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 3691914 Score = 159 bits (176), Expect = 3e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| ||||| ||||| || |||||||| ||| ||| |||| | ||||| |||||| Sbjct 3692852 TGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGAAAGAGTTCTGCCATCTTCCAATTGT 3692911 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| ||| | |||| ||| ||||| || ||||||||| |||||||| |||||| Sbjct 3692912 TTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTTGTCCTGAATTTTA 3692971 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 |||||| |||| ||||| || | ||| || || | ||||||||||||||| || Sbjct 3692972 GCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGACTTCGAGGGTAATGGTTTTACCAGTG 3693031 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 |||||||| || ||||||||||| Sbjct 3693032 AGAGTTTTCACGAAAATTTGCAT 3693054 Score = 154 bits (170), Expect = 1e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| ||||| ||||| || |||||||||||| ||| |||| | ||||| |||||| Sbjct 3693080 TGAAGCGTGGATTCTTTCTGAATGTTGTAATCGGAAAGAGTTCTACCATCTTCCAATTGT 3693139 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| ||| | |||| ||| ||||| || ||||||||| |||||||| ||||||| Sbjct 3693140 TTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTTGTCCTGAATTTTG 3693199 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 |||||| ||||||| || || ||| || || | ||| ||||||||||| || Sbjct 3693200 GCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCAAGGGTGATGGTTTTACCCGTA 3693259 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 ||||| |||||||| || ||||| Sbjct 3693260 AGAGTCTTTACAAAGATCTGCAT 3693282 Score = 150 bits (166), Expect = 1e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| ||||| ||||| || |||||||| ||| ||| |||| | ||||| |||||| Sbjct 3692624 TGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGAAAGAGTTCTACCATCTTCCAATTGT 3692683 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||| ||| | |||| ||| ||||| || ||||||||| |||||||| ||||||| Sbjct 3692684 TTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTTGTCCTGAATTTTG 3692743 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 |||||| ||||||| || || ||| || || | ||| ||||||||||| || Sbjct 3692744 GCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCAAGGGTGATGGTTTTACCGGTG 3692803 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 |||||||| || || |||||||| Sbjct 3692804 AGAGTTTTCACGAAGATTTGCAT 3692826 Score = 132 bits (146), Expect = 3e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || |||||||| |||||||| ||| ||| |||| | ||||| | |||| Sbjct 3691940 TGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGAGTTCTGCCATCTTCCAGTTGT 3691999 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | |||| ||| ||||| || ||||||||||||||| || |||||| Sbjct 3692000 TTACCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCTTCTTTATCCTGGATTTTG 3692059 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||||| |||| || || || | ||| || || | |||||||||||||| || Sbjct 3692060 GCTTTTACGTTTTCGATAGTGTCTGAAGCTTCGACTTCGAGAGTAATGGTTTTACCGGTG 3692119 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 |||||||| || || |||||||| Sbjct 3692120 AGAGTTTTCACGAAGATTTGCAT 3692142 Score = 132 bits (146), Expect = 3e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || |||||||| |||||||| ||| ||| |||| | ||||| | |||| Sbjct 3692168 TGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAAAGAGTTCTGCCATCTTCCAGTTGT 3692227 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | |||| ||| ||||| || ||||||||||||||| || |||||| Sbjct 3692228 TTACCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCTTCTTTATCCTGGATTTTG 3692287 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||||| |||| || || || | ||| || || | |||||||||||||| || Sbjct 3692288 GCTTTTACGTTTTCGATAGTGTCTGAAGCTTCGACTTCGAGAGTAATGGTTTTACCGGTG 3692347 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 |||||||| || || |||||||| Sbjct 3692348 AGAGTTTTCACGAAGATTTGCAT 3692370 Score = 132 bits (146), Expect = 3e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| ||||| |||||||| |||||||| ||| ||| |||| | ||||| | |||| Sbjct 3692396 TGAAGTGTGGATTCTTTTTGAATGTTGTAGTCGGAAAGAGTTCTGCCATCTTCCAGTTGT 3692455 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | |||| ||| ||||| || ||||||||||||||| || |||||| Sbjct 3692456 TTACCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCTTCTTTATCCTGGATTTTG 3692515 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||||| |||| || || || | ||| || || | ||||| |||||||| || Sbjct 3692516 GCTTTTACGTTTTCGATAGTGTCTGAAGCTTCGACTTCGAGAGTAATAGTTTTACCGGTG 3692575 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 |||||||| || || |||||||| Sbjct 3692576 AGAGTTTTCACGAAGATTTGCAT 3692598 Score = 113 bits (124), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | |||||| || || || || || |||||||| || ||| |||| | || || Sbjct 3693301 AACAAGATGAAGCGTAGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTGCCATCCTC 3693360 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 || ||| || ||||| | |||||||||||||| || ||||| |||||||| || Sbjct 3693361 TAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTATCTTG 3693420 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 || || ||| || ||| |||| || || || | ||| || || | ||| ||||||| Sbjct 3693421 GATCTTAGCT-TTGACATTTTCGATAGTGTCAGAAGCTTCCACCTCAAGGGTGATGGTTT 3693479 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || || || ||||||||||| |||||||| Sbjct 3693480 TTCCAGTGAGGGTTTTTACAAAGATTTGCAT 3693510 >seq1181 Length=949089 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| ||||| ||||| | ||||| || || || || ||||| || Sbjct 810294 CCACCGCGAAGTCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAA 810353 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | ||||||| | |||||| || ||| | ||||| | ||| ||||| ||| Sbjct 810354 AGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTTTGCTGGTCCGGTGGG 810413 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| ||||||| || ||| | || || ||||| ||| || Sbjct 810414 ATTCCTTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATCGTATCCGACGCTTCGACT 810473 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || |||||||| || || ||||| ||||||||||||||| Sbjct 810474 TCCAAAGTGATTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCATA 810521 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| ||||| ||||| | ||||| || || || || ||||| || Sbjct 810066 CCACCGCGAAGTCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAA 810125 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | ||||||| | |||||| || ||| | ||||| | ||| ||||| ||| Sbjct 810126 AGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTTTGCTGGTCCGGTGGG 810185 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| ||||||| || ||| | || || || || ||| || Sbjct 810186 ATTCCTTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATCGTGTCCGACGCTTCGACT 810245 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || |||||||| || || ||||| ||||||||||||||| Sbjct 810246 TCCAAAGTGATTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCATA 810293 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG 15208 || ||||| ||||| | ||||| ||||| || || || || || || | | || Sbjct 809850 CTCAAAACCAAATGCAATGTGGATTCTTTCTGAATATTATAGTCAGAAAGTGTACGACCG 809909 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| | |||||| || ||| | ||||| | |||||||| ||| |||||||| ||| Sbjct 809910 TCTTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGTTGGTCCGGTGGGATTCCTTCCTTG 809969 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || ||||||| || ||| | || || || || ||| || || || || || Sbjct 809970 TCTTGAATTTTGGCTTTGACATTCTCGATCGTGTCCGACGCTTCGACTTCCAAAGTGATT 810029 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||||| || || ||||| ||||||||||||||| Sbjct 810030 GTTTTACCGGTAAGCGTTTTGACAAAAATTTGCATA 810065 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCG 15208 || ||||| ||||| | ||||| || || || || ||||| || || | | || Sbjct 810534 CTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAAAGTGTACGACCG 810593 Query 15209 TCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTG 15268 ||||| | |||||| || ||| | ||||| | || ||||| ||| |||||||| ||| Sbjct 810594 TCTTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATTCCTTCCTTG 810653 Query 15269 TCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATG 15328 || ||||||| || ||| | || || ||||| ||| || || || || || Sbjct 810654 TCCTGAATTTTGGCTTTGACATTCTCGATCGTATCCGACGCTTCGACTTCCAAAGTGATT 810713 Query 15329 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||||| || || ||||| ||||||||||||||| Sbjct 810714 GTTTTACCGGTAAGCGTTTTGACAAAAATTTGCATA 810749 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||| ||| | ||||| ||||| || ||||| ||||| || | | ||||||| Sbjct 811452 ACTAGATGCAATGTGGATTCTTTCTGAATGTTATAATCAGAAAGCGTACGGCCGTCTTCA 811511 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| ||||| | ||||| | || || || || |||||||||||||| | Sbjct 811512 AGTTGTTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCTTGA 811571 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| ||| ||| |||| || || || || || || || |||||||| || Sbjct 811572 ATTTTGGCCTTGACATTTTCGATCGTGTCTGATGCCTCAACTTCCAATGTAATGGTCTTT 811631 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||||||| ||||| ||||| || ||||| Sbjct 811632 CCTGTCAGGGTTTTGACAAAGATCTGCAT 811660 >seq1153 Length=2037154 Score = 82.4 bits (90), Expect = 6e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 15174 CTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATA 15233 ||||||| |||||||||||| | | | | | || || | |||||||| ||| | | Sbjct 1923959 CTTTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGA 1924018 Query 15234 TCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTT 15293 | | || ||||| || |||||||| || ||||| || || ||| ||| | | Sbjct 1924019 TGAGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCT 1924078 Query 15294 CTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAA 15353 | |||||||| ||||| || | ||||||||||||||| || || ||||| || | Sbjct 1924079 CGATGGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTAAGGGTTTTCACGA 1924138 Query 15354 AAATTTGCAT 15363 | || ||||| Sbjct 1924139 AGATCTGCAT 1924148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362172358208550