Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq1163 105 6e-18 seq1181 91.5 1e-13 >seq1163 Length=8263949 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| || | | ||| || | ||| | || || || ||||| || |||||||| | Sbjct 3691688 CCTCCACGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAA 3691747 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| || | || ||||| ||||| || || |||| || | ||| |||||| || Sbjct 3691748 AGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGA 3691807 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||||||||| |||||| ||||| | ||| || || || || | Sbjct 3691808 ATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGACT 3691867 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 |||| ||||||||||||||| || | |||||| || |||||||||||| Sbjct 3691868 TCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCATT 3691915 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||||||||| | | | |||| ||| | ||||| || |||||||| ||||| || | Sbjct 3691914 TTCCTCCTCGAAGACGCAGAACCAGGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGG 3691973 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | ||| || | || ||||| |||||||| || |||| || | ||| |||||| | Sbjct 3691974 AAAGAGTTCTGCCATCTTCCAGTTGTTTACCGGCGAAAATCAGACGCTGTTGATCCGGTG 3692033 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || ||||| || ||||| |||||| | ||| ||| || || || Sbjct 3692034 GAATTCCTTCTTTATCCTGGATTTTGGCTTTTACGTTTTCGATAGTGTCTGAAGCTTCGA 3692093 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||||| |||||||||||||| || | |||||| || || ||||||||| Sbjct 3692094 CTTCGAGAGTAATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 3692143 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||||||||| | | | |||| ||| | ||||| || |||||||| ||||| || | Sbjct 3692142 TTCCTCCTCGAAGACGCAGAACCAGGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGG 3692201 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | ||| || | || ||||| |||||||| || |||| || | ||| |||||| | Sbjct 3692202 AAAGAGTTCTGCCATCTTCCAGTTGTTTACCGGCGAAAATCAGACGCTGTTGATCCGGTG 3692261 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | || ||||| || ||||| |||||| | ||| ||| || || || Sbjct 3692262 GAATTCCTTCTTTATCCTGGATTTTGGCTTTTACGTTTTCGATAGTGTCTGAAGCTTCGA 3692321 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||||| |||||||||||||| || | |||||| || || ||||||||| Sbjct 3692322 CTTCGAGAGTAATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 3692371 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||||||||| | | | |||| ||| | ||| || || || ||||| ||||| || | Sbjct 3692826 TTCCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGG 3692885 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | ||| || | || |||| ||||| || || |||| || | ||| |||||| | Sbjct 3692886 AAAGAGTTCTGCCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTG 3692945 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||||||||| |||||| ||||| | ||| || || || || Sbjct 3692946 GAATTCCCTCTTTGTCCTGAATTTTAGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGA 3693005 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||||| ||||||||||||||| || | |||||| || |||||||||||| Sbjct 3693006 CTTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCATT 3693055 >seq1181 Length=949089 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| || |||| ||||| ||||| ||||| |||||||| || || | Sbjct 811206 CCACCGCGAAGCCTCAATACCAAATGCAAGGTAGATTCCTTCTGAATATTATAGTCAGAA 811265 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | || || || ||||| || || | || | ||||||||||||| ||| Sbjct 811266 AGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGGGGG 811325 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || ||||||| |||||| || || | ||| ||| || | ||| || Sbjct 811326 ATTCCTTCTTTGTATTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGACGCCTCAATT 811385 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | || ||||| || ||||| | |||||||||||||| |||||| Sbjct 811386 TCCAACGTGATGGTCTTTCCTGTCAGGGTTTTGACAAAAATCTGCATT 811433 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| || |||| ||||| || || ||||| ||||||||||| || | Sbjct 810522 CCACCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAA 810581 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| |||| || || ||||| || || | || | |||||||| ||| || Sbjct 810582 AGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGG 810641 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG-T 18993 | || || ||||| |||||| ||| || | ||| ||||| | | ||| || Sbjct 810642 ATTCCTTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATCGTATC-CGACGCTTCGAC 810700 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | || || |||||||| || | |||||||||||||||||||| Sbjct 810701 TTCCAAAGTGATTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 810748 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| || |||| ||||| || || ||||||||||||||||| || | Sbjct 810750 CCACCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCCTTTTGAATATTGTAGTCAGAA 810809 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| |||| || || ||||| || || | || | |||||||| ||| || Sbjct 810810 AGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGG 810869 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || ||||| |||||| ||| || | ||| |||||| | ||| | Sbjct 810870 ATTCCTTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATAGTATCTGACGCCTCAACT 810929 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || ||||| || ||||| || || ||||||||||| ||||| Sbjct 810930 TCCAACGTGATGGTCTTTCCTGTCAATGTCTTGACAAAAATCTGCAT 810976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414564968460700