Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq1181 98.7 7e-16 seq1163 84.2 2e-11 >seq1181 Length=949089 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| | || || || ||||||||||| || | | || |||| || Sbjct 810996 ACCAAATGCAAGGTAGATTCCTTCTGAATATTATAGTCAGAAAGTGTGCGACCATCTTCA 811055 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | ||||||||| || || || |||| ||||||||| |||| | ||||| |||||| | Sbjct 811056 AGTTGTTTTCCGGCGAAGATTAACCTCTGCTGGTCCGGAGGAATTCCTTCCTTATCTTGA 811115 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||| |||||| | ||| || || | || || || || | || ||||||||| Sbjct 811116 ATTTTGGCTTTGACATTCTCAATCGTGTCCGACGCTTCGACTTCCAAAGTGATTGTTTTA 811175 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| | || || ||||| |||||||| Sbjct 811176 CCGGTAAGCGTTTTAACAAAAATTTGCAT 811204 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || || | |||||| | |||||||| || ||| || ||||||||||| ||||| Sbjct 811662 CCACCACGCAATCTGAGGACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATCAGAC 811721 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || ||| |||| |||| || ||||| ||||||||||| || ||||| || | || Sbjct 811722 AAAGTACGTCCATCTTCCAGCTGCTTTCCAGCAAATATCAAACGCTGCTGATCAGGTGGG 811781 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||||||||| || ||| ||| || | | | || || | | ||| || Sbjct 811782 ATGCCTTCTTTATCCTGGATCTTTGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCAACT 811841 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || || || || ||||| || |||||||| || || |||||| Sbjct 811842 TCAAGAGTTATGGTCTTCCCGGTCAATGTCTTCACGAAAATCTGCATG 811889 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 43907 CTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCA 43966 || || |||||||| | ||| || ||||||||||| || || | | ||| | Sbjct 810762 CTCAAAACCAAATGCAATGTGGATTCCTTTTGAATATTGTAGTCAGAAAGTGTACGACCG 810821 Query 43967 TCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTA 44026 || || | |||||| || || || ||||||| ||||||||| | || | ||||| || Sbjct 810822 TCTTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATTCCTTCCTTG 810881 Query 44027 TCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATT 44086 || |||||| |||||| | | | |||||||| || ||| || || | ||| || Sbjct 810882 TCCTGAATTTTGGCTTTGACATTCTCGATAGTATCTGACGCCTCAACTTCCAACGTGATG 810941 Query 44087 GTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || || || ||||| ||||| || ||||| Sbjct 810942 GTCTTTCCTGTCAATGTCTTGACAAAAATCTGCAT 810976 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 43906 TCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTC 43965 ||| || |||||||| | ||| || || |||||||| || || | | ||| | Sbjct 810305 TCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAAAGTGTACGACC 810364 Query 43966 ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTT 44025 || || | |||||| || || || ||||||| |||||||||| | || | ||||| || Sbjct 810365 GTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTTTGCTGGTCCGGTGGGATTCCTTCCTT 810424 Query 44026 ATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAAT 44085 || |||||| |||||| | | | ||||| | || || || || | || || Sbjct 810425 GTCCTGAATTTTGGCTTTGACATTCTCGATCGTATCCGACGCTTCGACTTCCAAAGTGAT 810484 Query 44086 TGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||||||||| | || || ||||| |||||||| Sbjct 810485 TGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 810520 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 43907 CTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCA 43966 || || |||||||| | ||| ||||| ||||||||||| || | | ||| | Sbjct 809850 CTCAAAACCAAATGCAATGTGGATTCTTTCTGAATATTATAGTCAGAAAGTGTACGACCG 809909 Query 43967 TCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTA 44026 || || | |||||| || || || ||||||| || |||||| | || | ||||| || Sbjct 809910 TCTTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGTTGGTCCGGTGGGATTCCTTCCTTG 809969 Query 44027 TCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATT 44086 ||| |||||| |||||| | | | || || | || || || || | || ||| Sbjct 809970 TCTTGAATTTTGGCTTTGACATTCTCGATCGTGTCCGACGCTTCGACTTCCAAAGTGATT 810029 Query 44087 GTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||||||||| | || || ||||| |||||||| Sbjct 810030 GTTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 810064 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 43906 TCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTC 43965 ||| || |||||||| | ||| || || |||||||| || || | | ||| | Sbjct 810077 TCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAAAGTGTACGACC 810136 Query 43966 ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTT 44025 || || | |||||| || || || ||||||| |||||||||| | || | ||||| || Sbjct 810137 GTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTTTGCTGGTCCGGTGGGATTCCTTCCTT 810196 Query 44026 ATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAAT 44085 || |||||| |||||| | | | || || | || || || || | || || Sbjct 810197 GTCCTGAATTTTGGCTTTGACATTCTCGATCGTGTCCGACGCTTCGACTTCCAAAGTGAT 810256 Query 44086 TGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||||||||| | || || ||||| |||||||| Sbjct 810257 TGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 810292 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 43907 CTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCA 43966 || || |||||||| | ||| || || |||||||| || || | | ||| | Sbjct 810534 CTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGAAAGTGTACGACCG 810593 Query 43967 TCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTA 44026 || || | |||||| || || || ||||||| ||||||||| | || | ||||| || Sbjct 810594 TCTTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATTCCTTCCTTG 810653 Query 44027 TCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATT 44086 || |||||| |||||| | | | ||||| | || || || || | || ||| Sbjct 810654 TCCTGAATTTTGGCTTTGACATTCTCGATCGTATCCGACGCTTCGACTTCCAAAGTGATT 810713 Query 44087 GTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||||||||| | || || ||||| |||||||| Sbjct 810714 GTTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 810748 >seq1163 Length=8263949 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGTC 43971 |||| || || ||| ||||||||||| || || ||| | | | || |||| || Sbjct 3692390 ACCAGGTGAAGTGTGGATTCTTTTTGAATGTTGTAGTCGGAAAGAGTTCTGC-CATCTTC 3692448 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 || |||||| || || || |||| || || || ||| | || | ||||||||||| Sbjct 3692449 CAGTTGTTTACCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCTTCTTTATCCTG 3692508 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||||| ||| || | | | ||| |||| | || || |||| ||||| ||||| Sbjct 3692509 GATTTTGGCTTTTACGTTTTCGATAGTGTCTGAAGCTTCGACTTCGAGAGTAATAGTTTT 3692568 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||| | ||| ||||| || |||||||| Sbjct 3692569 ACCGGTGAGAGTTTTCACGAAGATTTGCAT 3692598 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 ||||||||||| || || ||| | | | || |||| |||| |||||| || || || Sbjct 3691952 TCTTTTTGAATGTTGTAGTCGGAAAGAGTTCTGC-CATCTTCCAGTTGTTTACCGGCGAA 3692010 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 |||| || || || ||| | || | ||||||||||| ||||| ||| || | Sbjct 3692011 AATCAGACGCTGTTGATCCGGTGGAATTCCTTCTTTATCCTGGATTTTGGCTTTTACGTT 3692070 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 | | ||| |||| | || || |||| ||||| ||||||||||| | ||| ||||| Sbjct 3692071 TTCGATAGTGTCTGAAGCTTCGACTTCGAGAGTAATGGTTTTACCGGTGAGAGTTTTCAC 3692130 Query 44110 AAATATTTGCAT 44121 || |||||||| Sbjct 3692131 GAAGATTTGCAT 3692142 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989 ||||||||||| || || ||| | | | || |||| |||| |||||| || || || Sbjct 3692180 TCTTTTTGAATGTTGTAGTCGGAAAGAGTTCTGC-CATCTTCCAGTTGTTTACCGGCGAA 3692238 Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049 |||| || || || ||| | || | ||||||||||| ||||| ||| || | Sbjct 3692239 AATCAGACGCTGTTGATCCGGTGGAATTCCTTCTTTATCCTGGATTTTGGCTTTTACGTT 3692298 Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109 | | ||| |||| | || || |||| ||||| ||||||||||| | ||| ||||| Sbjct 3692299 TTCGATAGTGTCTGAAGCTTCGACTTCGAGAGTAATGGTTTTACCGGTGAGAGTTTTCAC 3692358 Query 44110 AAATATTTGCAT 44121 || |||||||| Sbjct 3692359 GAAGATTTGCAT 3692370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354770898029400