Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq1163 109 5e-19 >seq1163 Length=8263949 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||||||||| | | || |||| || ||||||||||||||||| |||||||| ||| Sbjct 3691914 TTCCTCCTCGAAGACGCAGAACCAGGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGG 3691973 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | |||| | |||||||| |||||| || || |||| || | ||||||||| | Sbjct 3691974 AAAGAGTTCTGCCATCTTCCAGTTGTTTACCGGCGAAAATCAGACGCTGTTGATCCGGTG 3692033 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||||| || ||||| ||| || | | | || || || ||| Sbjct 3692034 GAATTCCTTCTTTATCCTGGATTTTGGCTTTTACGTTTTCGATAGTGTCTGAAGCTTCGA 3692093 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||| | ||||||||||| ||||| | ||||| || || ||||||||| Sbjct 3692094 CTTCGAGAGTAATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 3692143 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||||||||| | | || |||| || ||||||||||||||||| |||||||| ||| Sbjct 3692142 TTCCTCCTCGAAGACGCAGAACCAGGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGG 3692201 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | |||| | |||||||| |||||| || || |||| || | ||||||||| | Sbjct 3692202 AAAGAGTTCTGCCATCTTCCAGTTGTTTACCGGCGAAAATCAGACGCTGTTGATCCGGTG 3692261 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||||| || ||||| ||| || | | | || || || ||| Sbjct 3692262 GAATTCCTTCTTTATCCTGGATTTTGGCTTTTACGTTTTCGATAGTGTCTGAAGCTTCGA 3692321 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||| | ||||||||||| ||||| | ||||| || || ||||||||| Sbjct 3692322 CTTCGAGAGTAATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 3692371 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||||||||| | | || |||| || || || |||||||| || |||||||| ||| Sbjct 3692826 TTCCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGG 3692885 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | |||| | |||||||||||||||||| || |||| || | ||||||||| | Sbjct 3692886 AAAGAGTTCTGCCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTG 3692945 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | || |||||||| |||||| || || | | | | || || ||| Sbjct 3692946 GAATTCCCTCTTTGTCCTGAATTTTAGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGA 3693005 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||| | |||||||||||| || || | ||||| || |||||||||||| Sbjct 3693006 CTTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCATT 3693055 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 19997 AACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCT 20056 || || || || ||||| ||||||||||| ||||||||||| | |||| | |||| Sbjct 3691703 AAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCCATCT 3691762 Query 20057 TCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCG 20116 |||| ||||||||| || |||| || | ||||||||| || | || |||||||| Sbjct 3691763 TCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTTGTCC 3691822 Query 20117 GCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTT 20176 |||||| || || | | | | || || ||| ||| | |||||||||| Sbjct 3691823 TGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGACTTCGAGGGTAATGGTT 3691882 Query 20177 TTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || || || | ||||| || |||||||||||| Sbjct 3691883 TTACCAGTGAGAGTTTTCACGAAAATTTGCATT 3691915 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||||||||| | | || |||| || ||||| ||||||||||| |||||||| ||| Sbjct 3692370 TTCCTCCTCGAAGACGCAGAACCAGGTGAAGTGTGGATTCTTTTTGAATGTTGTAGTCGG 3692429 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | |||| | |||||||| |||||| || || |||| || | ||||||||| | Sbjct 3692430 AAAGAGTTCTGCCATCTTCCAGTTGTTTACCGGCGAAAATCAGACGCTGTTGATCCGGTG 3692489 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||||| || ||||| ||| || | | | || || || ||| Sbjct 3692490 GAATTCCTTCTTTATCCTGGATTTTGGCTTTTACGTTTTCGATAGTGTCTGAAGCTTCGA 3692549 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||| | ||||| ||||| ||||| | ||||| || || ||||||||| Sbjct 3692550 CTTCGAGAGTAATAGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 3692599 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||||||||| | | || |||| || || || |||||||| || |||||||| ||| Sbjct 3692598 TTCCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGG 3692657 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | |||| || |||||||||||||||||| || |||| || | ||||||||| | Sbjct 3692658 AAAGAGTTCTACCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTG 3692717 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | || |||||||| |||||| || || | | | | || | ||| Sbjct 3692718 GAATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAA 3692777 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||| | ||| |||||||| ||||| | ||||| || || ||||||||| Sbjct 3692778 CTTCAAGGGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCATT 3692827 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||||||||| | | || |||| || || || |||||||| || |||||||||||| Sbjct 3693054 TTCCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAATCGG 3693113 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | |||| || |||||||||||||||||| || |||| || | ||||||||| | Sbjct 3693114 AAAGAGTTCTACCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTG 3693173 Query 20100 GCACGCCTTCTTTGTCGGCAATTTT 20124 | | || |||||||| |||||| Sbjct 3693174 GAATTCCCTCTTTGTCCTGAATTTT 3693198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419579273735550