Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1163 104 2e-17 seq1153 102 7e-17 seq1181 98.7 8e-16 >seq1163 Length=8263949 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| || | | ||| ||||| || |||||| || ||||| ||||||||||||| Sbjct 3691687 ACCTCCACGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGA 3691746 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || | || ||||| || || ||| || |||| | |||||| |||||| || Sbjct 3691747 AAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGG 3691806 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | || |||||| |||||| ||| | | ||||| || | || || || Sbjct 3691807 AATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAG-CTTCGA 3691865 Query 48679 C-TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | |||| || ||||||||||| |||||||||||||| ||||| ||||| Sbjct 3691866 CTTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 3691914 >seq1153 Length=2037154 Score = 102 bits (112), Expect = 7e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 48539 TTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATT 48598 ||||| ||||||||||| | ||| || | ||||||||||| || ||| || | || Sbjct 1923961 TTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGATG 1924020 Query 48599 AAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCT 48658 | ||||| ||||| ||| | | ||||||||| || || ||||| | | | Sbjct 1924021 AGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCG 1924080 Query 48659 ATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAA 48718 |||||||| | | ||| ||||| || ||||||||||| || || |||||||| || Sbjct 1924081 ATGGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTAAGGGTTTTCACGAAG 1924140 Query 48719 ATCTGCATCGTGTCTT 48734 |||||||| ||| ||| Sbjct 1924141 ATCTGCATGGTGGCTT 1924156 >seq1181 Length=949089 Score = 98.7 bits (108), Expect = 8e-16 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||| | ||| || || ||||| | |||| ||||| ||||| ||||| |||| Sbjct 810521 ACCACCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGA 810580 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || ||| || |||| || || || || ||| || | || || | |||||| ||| | Sbjct 810581 -AAGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGTG 810639 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | |||||||||| |||||| |||| | | | || ||||| | | || || Sbjct 810640 GGATTCCTTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATCGTATCCGACG-CTTCG 810698 Query 48678 TCT-CGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | | || || ||||||||||| || ||||| |||||||| ||||| Sbjct 810699 ACTTCCAAAGTGATTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 810748 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||| | ||| || || ||||| | |||| ||||||||||| ||||| |||| Sbjct 810749 ACCACCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCCTTTTGAATATTGTAGTCAG- 810807 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || ||| || |||| || || || || ||| || | || || | |||||| ||| | Sbjct 810808 AAAGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGTG 810867 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | |||||||||| |||||| |||| | | | || ||||| | | ||| Sbjct 810868 GGATTCCTTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATAGTATCTGACGCCTCAA 810927 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || || || | || || |||||||||||||| Sbjct 810928 CTTCCAACGTGATGGTCTTTCCTGTCAATGTCTTGACAAAAATCTGCAT 810976 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || ||||| || | || ||||| || ||| ||||||||||| |||||||||| | Sbjct 811662 CCACCACGCAATCTGAGGACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATCAGAC 811721 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || | || ||||||||||| || | | || |||||||||||||| || Sbjct 811722 AAAGTACGTCCATCTTCCAGCTGCTTTCCAGCAAATATCAAACGCTGCTGATCAGGTGGG 811781 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGC-TTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||| || ||| || || ||| || | | | ||||| || | || ||| Sbjct 811782 ATGCCTTCTTTATCCTGGATCTT-TGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCAAC 811840 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 || | |||||||| || ||||| | || ||||| ||||||||||| ||| Sbjct 811841 TTCAAGAGTTATGGTCTTCCCGGTCAATGTCTTCACGAAAATCTGCATGGTG 811892 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||| | || || || ||||| | |||| ||||| ||||| ||||| |||| Sbjct 810293 ACCACCGCGAAGTCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGA 810352 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || ||| || |||| || || || || ||| || | || || | ||||| ||| | Sbjct 810353 -AAGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTTTGCTGGTCCGGTG 810411 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | |||||||||| |||||| |||| | | | || ||||| | | || || Sbjct 810412 GGATTCCTTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATCGTATCCGACG-CTTCG 810470 Query 48678 TCT-CGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | | || || ||||||||||| || ||||| |||||||| ||||| Sbjct 810471 ACTTCCAAAGTGATTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 810520 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| ||||| | || || || ||||| | |||| ||||| ||||| ||||| |||| Sbjct 810065 ACCACCGCGAAGTCTCAAAACCAAATGCAATGTGGATTCCTTCTGAATATTGTAGTCAGA 810124 Query 48559 CAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || ||| || |||| || || || || ||| || | || || | ||||| ||| | Sbjct 810125 -AAGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTTTGCTGGTCCGGTG 810183 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | |||||||||| |||||| |||| | | | || || || | | || || Sbjct 810184 GGATTCCTTCCTTGTCCTGAATTTTGGCTTTGACATTCTCGATCGTGTCCGACG-CTTCG 810242 Query 48678 TCT-CGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | | || || ||||||||||| || ||||| |||||||| ||||| Sbjct 810243 ACTTCCAAAGTGATTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 810292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421243242301550