Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq1394 223 2e-53 >seq1394 Length=3067246 Score = 223 bits (246), Expect = 2e-53 Identities = 373/533 (70%), Gaps = 10/533 (2%) Strand=Plus/Minus Query 3617 AATGAATTGATATATTTTGCTGACGTATGCGCTGGTCCAGGTGGTTTCAGTGAATATATG 3676 || |||||| |||| || || || || || |||||||||||||||||||| ||||| || Sbjct 2594846 AACGAATTGCTATACTTCGCAGATGTGTGTGCTGGTCCAGGTGGTTTCAGCGAATACATT 2594787 Query 3677 TTATGGAGAAAGAAATGGAATATCAAAGGTTATGGTATGACGTTACGCGaaa--aaaaTG 3734 || | | |||||| ||| || |||||| | ||| | || || | ||| |||||| Sbjct 2594786 TTGTCAAAAAAGAAGTGGCATGCCAAAGGATTTGGATTCACTTT--GAAAAACGAAAATG 2594729 Query 3735 ATTTTCAACTGAACAGATTTTACGAT--AACTTTTCGGAAACTTTACACCCGTATTATGG 3792 ||||| | || | || | || | | | | | |||||||| || |||| |||||| Sbjct 2594728 ATTTTTCATTGGATGACTTCTTCGCTGGACCATGT--GAAACTTTCCATCCGTTTTATGG 2594671 Query 3793 TCCGCTTA-ACGATGGTAATATCTACAATTCACAAAATCAGAAAGGTTTTTGTGAAATGA 3851 | || | || | || ||| | | | |||||||| | | ||| | || Sbjct 2594670 -CAGCAAAGACAACGGAAATGTATTTGACGTGCAAAATCAAAGGGAGTTTAGATCGATAG 2594612 Query 3852 TTATGAAAGATACCGAAGGAAAAGGTGTACATTTTATGATGGCTGACGGTGGGTTCTCGG 3911 | ||| | |||| || || ||||| |||||||| |||||| | || || || || || | Sbjct 2594611 TGATGGGACATACTGATGGTAAAGGCGTACATTTCATGATGTCAGATGGAGGATTTTCAG 2594552 Query 3912 TTGAGGGTCAAGAAAATATGCAAGAAATGTTATCGAAAAAGATGTATTTGTGTCAATGTT 3971 | || ||||||||||| || || ||||| |||||||| | | ||||| |||||||| | Sbjct 2594551 TGGAAGGTCAAGAAAACATACAGGAAATTTTATCGAAGCAATTATATTTATGTCAATGCT 2594492 Query 3972 TAATTGCATTGATGATCATACGAATTGGTGGTCATTGTGTTATCAAATTTTTCGATATAT 4031 || | ||||||||||| | || |||| |||| ||||| ||| | |||||| ||| Sbjct 2594491 TAGTGGCATTGATGATAGTGAGACCAAGTGGACATTTTGTTACAAAACTGTTCGATCTAT 2594432 Query 4032 TTACACCTTTTAGTGCTGGTTTAGTGTATTTGATGTATAGATCTTTTAATCGTATTTGTA 4091 ||||||| ||||| | ||| | || ||| ||||||| | ||| | |||||| | Sbjct 2594431 TTACACCATTTAGCGTTGGGCTTGTTTATCTGATGTACCATTGCTTTGAAAGTATTTCGA 2594372 Query 4092 TTTTCAAACCACATTCATCGCGACCGGCCAATTCTGAAAGATATTTGGTGTGT 4144 |||| || || || | || |||| |||||||| ||| | |||||| | ||| Sbjct 2594371 TTTTTAAGCCTAATACTTCCAGACCAGCCAATTCAGAACGTTATTTGATATGT 2594319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276548375729650