Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1416 125 4e-24 seq1294 125 4e-24 seq1163 122 5e-23 seq1200 118 6e-22 >seq1416 Length=2314042 Score = 125 bits (138), Expect = 4e-24 Identities = 84/93 (90%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||| ||||||||| || ||||||||||| |||||||||| ||||||||||||||||| Sbjct 1432264 AATAAATAAAAAAA-AATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTA 1432322 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||||||||| Sbjct 1432323 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 1432355 >seq1294 Length=979139 Score = 125 bits (138), Expect = 4e-24 Identities = 87/98 (89%), Gaps = 5/98 (5%) Strand=Plus/Minus Query 11432 TATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491 |||| |||||| ||||||| ||||||||||| |||||||||| |||||||||||| Sbjct 120799 TATA-AATTAAAAAAAAAT----TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGT 120745 Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||| |||||||||||||||||||| Sbjct 120744 TATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 120707 >seq1163 Length=8263949 Score = 122 bits (134), Expect = 5e-23 Identities = 78/86 (91%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | ||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 119051 AAAAAATAAGTTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 118992 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 118991 GCTCTAACCAACTGAGCTAATGGGCC 118966 >seq1200 Length=4144520 Score = 118 bits (130), Expect = 6e-22 Identities = 80/89 (90%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATT-GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||||| | ||| ||||||||| |||||||||| ||||||||||||||||||||| Sbjct 3089181 ATAAAAAAGAATATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 3089122 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 3089121 GACGCTCTAACCAACTGAGCTAATGGGCC 3089093 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261486260267800