Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1170 188 1e-43 seq1416 154 2e-33 >seq1170 Length=7610050 Score = 188 bits (208), Expect = 1e-43 Identities = 202/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | |||||| ||||||||||| || ||||| |||||||||||| Sbjct 4741817 GCGAAGCGTCACAGGAAAGTTCTTCGCGATAACATCCAGGGTATCACTAAGCCAGCTATC 4741758 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| | || || |||||||| ||||||||| | || || ||| |||| ||||| | | Sbjct 4741757 CGTCGTTTAGCACGACGTGGTGGTGTCAAGCGTATTTCCGGCTTGATCTACGAAGAAACT 4741698 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| || ||| |||||||| ||| |||||| | |||||| | || || || Sbjct 4741697 CGAGGTGTGTTAAAGGTCTTCCTCGAGAACGTTATTCGCGATGCTGTTACTTACACTGAA 4741638 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||| | ||||| || || ||||||| |||| || || |||||||||||||| Sbjct 4741637 CACGCGAAAAGGAAGACCGTGACAGCCATGGACGTCGTATACGCCCTGAAACGTCAAGGC 4741578 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || || ||||| ||||| Sbjct 4741577 AGAACTCTATACGGCTTTGGTGGTTAA 4741551 Score = 167 bits (184), Expect = 4e-37 Identities = 200/269 (74%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||| | | | |||| || |||||||| ||||| |||||||||||||| || Sbjct 1760017 GCGAAGCGCCATAGGA-AGGTCTTACGTGATAACATTCAAGGTATCACCAAGCCAGCCAT 1760075 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| ||||| | ||||| || ||||||||| | ||||| ||| |||||||||||| Sbjct 1760076 TCGTCGATTGGCTAGACGTGGCGGTGTCAAGCGTATTTCTGGCTTGATCTATGAAGAGAC 1760135 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | ||| |||| |||| || | | ||| || | ||||||| | ||||||||| Sbjct 1760136 CAGAGGTGTCCTGAAAGTCTTTCTGGAAAACGTCATTCGTGATGCTGTGACCTATACCGA 1760195 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | |||||||| || | |||||| | || || || ||||||| ||||| Sbjct 1760196 ACACGCCAAGAGGAAGACTGTAACAGCTATGGATGTGGTTTACGCTCTGAAACGCCAAGG 1760255 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | |||||||||| || |||||| Sbjct 1760256 AAGAACTCTTTATGGTTTCGGTGGTTAAT 1760284 >seq1416 Length=2314042 Score = 154 bits (170), Expect = 2e-33 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || ||||||||||| || || |||||||| || ||||||||| |||| |||||||| Sbjct 958180 CTCCGTGATAACATCCAGGGGATTACCAAGCCGGCCATCCGTCGTTTGGCACGTCGTGGC 958121 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 |||||||| ||| | || |||||| | |||||||| | |||| ||| |||| | ||| Sbjct 958120 GGAGTCAAACGTATTTCCGGATTGATTTATGAAGAAACACGTGGTGTACTGAAAGTGTTC 958061 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 | | | ||||| | ||| || | ||| ||||| || || ||| | |||||||| Sbjct 958060 TTAGAAAATGTTATTCGTGACGCGGTTACCTACACCGAACATGCAAAAAGAAAGACTGTG 958001 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || ||||||| ||||||| || ||||||||||||| Sbjct 958000 ACTGCCATGGACGTCGTCTACGCCCTGAAACGTCAAGG 957963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073782824150