Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1492 104 3e-17 seq1170 104 3e-17 seq1238 82.4 1e-10 >seq1492 Length=1263116 Score = 104 bits (114), Expect = 3e-17 Identities = 187/269 (70%), Gaps = 6/269 (2%) Strand=Plus/Plus Query 63591 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63650 || ||||| || ||| | |||| | |||||||||| || || ||||| || ||||| Sbjct 356879 CTGGACATCTGCTGATTATTAGTACAAGCATTAAATAGAGTTGGTGAAGCATGTGTAAAA 356938 Query 63651 CATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63709 || |||||| || || ||| || || || || || || || || || |||||| Sbjct 356939 TATCGTTCAGACAAATA-ATTATATGTTTCTATGACTTTATCAATGTCATTTTCATGAAT 356997 Query 63710 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 63769 || || || || | ||| ||||| || ||||| || || || ||||| || ||||| Sbjct 356998 ACCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCATTGATTTT 357057 Query 63770 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGT 63827 || || ||| | | || | ||||||||||||| ||| || || ||||| || || Sbjct 357058 CAGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAA--TCACGA 357115 Query 63828 TCGTAAATAATAACCGAGTTGAGTTTATC 63856 ||||| || ||| | || | ||||| || Sbjct 357116 TCGTATATTATAGCAGAATCCAGTTTCTC 357144 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 62274 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 62333 ||||| || || || | ||||| ||| ||||||| ||| || | ||| ||||| Sbjct 355143 TTCTTCATATCTTCGTCCCATAGACCTCTACTGGTTAAATCTCGCAGTAAATGTGGATTG 355202 Query 62334 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62393 || | |||||||||||||||||| | || || ||||| || ||||||||||| Sbjct 355203 ACAATGATAAATTCTCCAGACAATACGCGCCTCACATATATATTGCTTGTATACGGTTCA 355262 Query 62394 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62453 | || || || ||||| ||||| || || || || || || ||||||||||| | || Sbjct 355263 ATGGATTCGTTGTTTCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAA 355322 Query 62454 AAACTATTTCTAAGACCGT 62472 | | |||||| | |||| Sbjct 355323 AGAGAATTTCTTACTCCGT 355341 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 ||||||| ||| || ||||||||||||||||| |||||| | ||||| || ||||| | Sbjct 357355 CACTAAAACTTTTCTTGGTTTCCTTGTGTAGATTAGATACGTCAATTCTTGCAGCTAGTA 357414 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 | |||||||| ||||||| || | || || || |||| ||||||||| | || | Sbjct 357415 TAGCATAATCAGGATGTTTAGTTGCCATTGTAGCAGCAGTTTCAGCTGCCAGATTATCAA 357474 Query 64075 ATTCTACCGTTGTTACTCCATTATATA 64101 | || || ||||||||| ||||| Sbjct 357475 GTATAACTGTAGTTACTCCAGAATATA 357501 >seq1170 Length=7610050 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 ||||||| | ||| ||||| |||||||||||||| |||| || ||||| || |||| Sbjct 7500298 CACTAAAAACTTTCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGG 7500239 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 | |||||||| |||||||| || | ||| ||||| |||| ||||||| | | |||| Sbjct 7500238 TTGCATAATCTGGATGTTGATTAATCATAGTCGCTGCAGTTTCAGCTGCCAAATTATCCA 7500179 Query 64075 ATTCTACCGTTGTTACTCCA 64094 |||| ||||| |||||| Sbjct 7500178 ATTCACTTGTTGTCACTCCA 7500159 >seq1238 Length=3292682 Score = 82.4 bits (90), Expect = 1e-10 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 33801 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATA 33860 ||||||||| | |||||||| || || | |||||||||||||||| |||||| ||| Sbjct 3273697 TACTTCTTCTATGGTCCAAAAAGAGGCTACAGCCTTTTTATACATGTCCCAGATATCAGG 3273756 Query 33861 ATATTGGATTGGGAAAATAACAAATCTATTTGG 33893 ||| || || |||||||| ||||| | ||||| Sbjct 3273757 ATACTGAATAGGGAAAATTACAAAACGGTTTGG 3273789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622935130398000