Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1238 156 5e-33 seq1169 120 3e-22 seq1248 113 5e-20 >seq1238 Length=3292682 Score = 156 bits (172), Expect = 5e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 93114 CTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCT 93173 ||||||||||||| || | || |||||||| || | |||||| | | ||||||||||| Sbjct 3271983 CTTCGTCTCGTGAGATAAGTTCGTTGCTGAAGGTGAGACCTGGCATGACTCCTCGTTTCT 3272042 Query 93174 TGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATG 93233 | |||||||| || | || ||||| ||| || || ||||| || || || ||||||| Sbjct 3272043 TTAGCCAAAAAATGGCTGCGAAACTGCCACTGAAGAAGATACCCTCAACTGCCGCAAATG 3272102 Query 93234 CCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGG 93293 | || | |||||||| ||| | ||| | | ||||||| ||||| ||||||| | Sbjct 3272103 CGACTACACGTTCGGGAAACGTAGCGCTCTCATGATTGATCCAGTTTAATGCCCAATTAG 3272162 Query 93294 CTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 | || ||||| | |||||| ||||| || || || ||||||| | |||||| Sbjct 3272163 CCTTCTTCTTGACACAAGGAAGTGTCTCAATCGCATTAAATAAGAAATCTC 3272213 Score = 136 bits (150), Expect = 4e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || || || || || | || ||||||||| |||||||| | ||| || || |||||||| Sbjct 3273243 ATATAAGTTTCAATGAGCAAAGAATACATCTCAGAATGAATATTTTCTATGGCAATTTGA 3273302 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || |||||||| | ||||| | || | ||||||||| |||||||| | ||| Sbjct 3273303 AAGCCATAGAAACAACGTGCTTCGGAAATTTTCACTTCTTGGCTGAATCTCTCAATTAGA 3273362 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || ||||| || ||||||||||| || |||||||| || || | ||| |||||| || Sbjct 3273363 TTCTCATTAACGATACCATCGGAAGCGGCAAAAAATGCTAAAACATGAGAGATAAAACGT 3273422 Query 93542 TTCTCATC 93549 |||||||| Sbjct 3273423 TTCTCATC 3273430 >seq1169 Length=4285202 Score = 120 bits (132), Expect = 3e-22 Identities = 81/88 (92%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||| ||||| |||||||||| || |||||||||| Sbjct 2670591 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCATCTGGGAGCGTGG 2670650 Query 126327 GTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||||||||||| |||||| || Sbjct 2670651 GTTCGAACCCCACACCTGGCAAATTTTT 2670678 >seq1248 Length=5779413 Score = 113 bits (124), Expect = 5e-20 Identities = 77/84 (92%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 |||||||||||| |||||||||||||||| |||||||||||||||| || |||||||||| Sbjct 5731646 AGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGATCTGGTTCCCATCTGGGAGCGTGG 5731587 Query 126327 GTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||| | ||||| Sbjct 5731586 GTTCGAACCCCACACTTAGCAAAT 5731563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556850010822000