Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq1163 102 6e-17 seq1181 93.3 3e-14 >seq1163 Length=8263949 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || | ||||| | || || |||||||||||| | ||| ||||| | Sbjct 3693055 AATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTC 3692996 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | | | ||| |||||| || |||||||| | || | || Sbjct 3692995 AGACACCATCGAAAACGTAAAGGCTAAAATTCAGGACAAAGAGGGAATTCCACCGGATCA 3692936 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||| | || || || || ||||||||| | |||||| | |||| | |||| ||||| Sbjct 3692935 ACAGCGTCTGATTTTCGCCGGCAAACAATTGGAAGATGGCAGAACTCTTTCCGACTACAA 3692876 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||||| ||||| || ||||| |||| | ||| | ||||||||| Sbjct 3692875 CATTCAGAAAGAATCCACGCTTCACCTGGTTCTGCGTCTTCGAGGAGGA 3692827 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| | || || |||||||| ||| | || |||||| | Sbjct 3693510 ATGCAAATCTTTGTAAAAACCCTCACTGGAAAAACCATCACCCTTGAGGTGGAAGCTTCT 3693451 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || || || |||||||| ||| | ||| | | ||| Sbjct 3693450 GACACTATCGAAAATGTCAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAA 3693391 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || | | ||||||||||| || |||||||| ||| | |||| | | || ||||| Sbjct 3693390 CAACGTTTGATCTTTGCTGGAAAGCAACTAGAGGATGGCAGAACTCTTTCTGACTACAAC 3693331 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||||||||| |||||| | || | ||| | || ||||| Sbjct 3693330 ATTCAGAAGGAATCTACGCTTCATCTTGTTCTGCGTCTTCGTGGAGG 3693284 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || | ||||| | || || ||||||||||| | ||| ||||| | Sbjct 3692143 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATTACTCTCGAAGTCGAAGCTTC 3692084 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | | | || ||||| |||||||| || | || | || Sbjct 3692083 AGACACTATCGAAAACGTAAAAGCCAAAATCCAGGATAAAGAAGGAATTCCACCGGATCA 3692024 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||| | || || || || || |||||||| |||||| | |||| | |||| ||||| Sbjct 3692023 ACAGCGTCTGATTTTCGCCGGTAAACAACTGGAAGATGGCAGAACTCTTTCCGACTACAA 3691964 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||| || |||||||| ||||| |||| | ||| | ||||||||| Sbjct 3691963 CATTCAAAAAGAATCTACACTTCACCTGGTTCTGCGTCTTCGAGGAGGA 3691915 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || | ||||| | || || ||||||||||| | ||| ||||| | Sbjct 3692371 AATGCAAATCTTCGTGAAAACTCTCACCGGTAAAACCATTACTCTCGAAGTCGAAGCTTC 3692312 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | | | || ||||| |||||||| || | || | || Sbjct 3692311 AGACACTATCGAAAACGTAAAAGCCAAAATCCAGGATAAAGAAGGAATTCCACCGGATCA 3692252 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||| | || || || || || |||||||| |||||| | |||| | |||| ||||| Sbjct 3692251 ACAGCGTCTGATTTTCGCCGGTAAACAACTGGAAGATGGCAGAACTCTTTCCGACTACAA 3692192 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||| || |||||||| ||||| |||| | ||| | ||||||||| Sbjct 3692191 CATTCAAAAAGAATCTACACTTCACCTGGTTCTGCGTCTTCGAGGAGGA 3692143 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || | ||||| | || || |||||||||||| | ||| ||||| | Sbjct 3691915 AATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTC 3691856 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | | | ||| |||||| || |||||||| | || | || Sbjct 3691855 AGACACCATCGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATCA 3691796 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||| | || || || || ||||||||||| |||||| | |||| | | |||||||| Sbjct 3691795 ACAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACAA 3691736 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || || ||||| || || || | || ||||| | || ||||| Sbjct 3691735 CATCCAAAAAGAATCCACACTCCACTTAGTTTTACGACTTCGTGGAGG 3691688 >seq1181 Length=949089 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| ||||||| | || || ||||| || || ||||| ||||| | Sbjct 811204 ATGCAAATTTTTGTTAAAACGCTTACCGGTAAAACAATCACTTTGGAAGTCGAAGCGTCG 811145 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || | || |||||| ||||| || || | ||| |||| Sbjct 811144 GACACGATTGAGAATGTCAAAGCCAAAATTCAAGATAAGGAAGGAATTCCTCCGGACCAG 811085 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGAT--TTAAAAACTATGGCCGATTACA 22011 ||||| | ||||| || || |||||||| |||||| | | ||| | | || || | Sbjct 811084 CAGAGGTTAATCTTCGCCGGAAAACAACTTGAAGATGGTCGCACACTTT--CTGACTATA 811027 Query 22012 ATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||||||||||| | ||| |||| | |||||||| || || Sbjct 811026 ATATTCAGAAGGAATCTACCTTGCATTTGGTTCTCCGTTTACGTGGTGG 810978 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | ||||| | || || ||||| ||||| |||| ||||| || Sbjct 809836 ATGCAGATTTTTGTCAAAACTCTCACTGGTAAAACTATTACGCTGGAGGTCGAAGCTTCA 809777 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | | ||| |||||| |||||||| || | ||| | ||| Sbjct 809776 GACACGATTGAAAACGTGAAGGCGAAAATTCAAGATAAAGAAGGCATTCCTCCCGATCAA 809717 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||| || || || ||||| || ||||| ||| | ||| | |||| || ||| Sbjct 809716 CAAAGACTAATTTTCGCGGGCAAGCAGCTAGAGGATGGACGGACTTTATCCGACTATAAT 809657 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATAT 22064 |||||||| |||||||| ||||| | ||| | || | |||| ||| || Sbjct 809656 ATTCAGAAAGAATCTACACTTCACCTTGTACTTCGACTTAGAGGCGGAGAT 809606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358118034798700