Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq1248 93.3 4e-14 >seq1248 Length=5779413 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/228 (69%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 20240 CCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACT 20299 |||||||||||||| | ||| || || | | |||||| || |||||||| || ||| Sbjct 4700410 CCAGTAACATGAGCGATCATGTACGTCAGCAAGGAATATGACGCTATGTTAAATGGCACT 4700469 Query 20300 CCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACA 20359 || |||||||||||| | || ||||| ||||| ||| | || |||| | ||| Sbjct 4700470 CCTAAACCCATGTCTGCGCTTCTTTGATAAAGCTGCGTGGACAATTCTCCGTTATTTACG 4700529 Query 20360 TAAAATTGACATAACAA---GTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGG 20416 |||||||| || ||| ||| || ||||| | |||||| | | || |||| Sbjct 4700530 TAAAATTG---TACCAAAGTGTGGCACGGCGGCAATGCCATCTTTGGAATATCAACCGGA 4700586 Query 20417 TTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATT 20464 ||||| || |||| || || | |||||| | ||| || |||||| Sbjct 4700587 TTCCAGGCTGACATTATAATACGTCTATCCTCAGGAGAATGCTTTATT 4700634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441364248402000