Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20colombica_20[refseq_20GCF_5F001594045.1_202016-03-25] 1,550 sequences; 291,257,934 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1163 116 4e-21 seq1181 96.9 3e-15 >seq1163 Length=8263949 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||||| ||| | || | | || || |||||||||||||||||| Sbjct 3691916 CCTCCTCGAAGACGCAGAACCAGGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 3691975 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| | || | || || ||||||||||||| | || ||||||||||| ||||| || Sbjct 3691976 AGAGTTCTGCCA-TCTTCCAGTTGTTTACCGGCGAAAATCAGACGCTGTTGATCCGGTGG 3692034 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || |||||||| || |||||| ||||| | ||| | ||||| | | || || Sbjct 3692035 AATTCCTTCTTTATCCTGGATTTTGGCTTTTACGTTTTCGATAGTGTCTGAAGCTTCGAC 3692094 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | |||||||| || |||||||| || || || ||||| Sbjct 3692095 TTCGAGAGTAATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3692142 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||||| ||| | || | | || || |||||||||||||||||| Sbjct 3692144 CCTCCTCGAAGACGCAGAACCAGGTGAAGTGTAGATTCTTTTTGAATGTTGTAGTCGGAA 3692203 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| | || | || || ||||||||||||| | || ||||||||||| ||||| || Sbjct 3692204 AGAGTTCTGCCA-TCTTCCAGTTGTTTACCGGCGAAAATCAGACGCTGTTGATCCGGTGG 3692262 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || |||||||| || |||||| ||||| | ||| | ||||| | | || || Sbjct 3692263 AATTCCTTCTTTATCCTGGATTTTGGCTTTTACGTTTTCGATAGTGTCTGAAGCTTCGAC 3692322 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | |||||||| || |||||||| || || || ||||| Sbjct 3692323 TTCGAGAGTAATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3692370 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||||| ||| | || | | || || |||||||||||||||||| Sbjct 3692372 CCTCCTCGAAGACGCAGAACCAGGTGAAGTGTGGATTCTTTTTGAATGTTGTAGTCGGAA 3692431 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| | || | || || ||||||||||||| | || ||||||||||| ||||| || Sbjct 3692432 AGAGTTCTGCCA-TCTTCCAGTTGTTTACCGGCGAAAATCAGACGCTGTTGATCCGGTGG 3692490 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || |||||||| || |||||| ||||| | ||| | ||||| | | || || Sbjct 3692491 AATTCCTTCTTTATCCTGGATTTTGGCTTTTACGTTTTCGATAGTGTCTGAAGCTTCGAC 3692550 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | |||||||| || |||||||| || || || ||||| Sbjct 3692551 TTCGAGAGTAATAGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3692598 Score = 111 bits (122), Expect = 2e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||||| ||| | || | | || || || ||||||||||||||| Sbjct 3692828 CCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGAA 3692887 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| | || | || || | |||||| |||| | || ||||||||||| ||||| || Sbjct 3692888 AGAGTTCTGCCA-TCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGG 3692946 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || |||||||| ||| |||| | |||| | ||| | |||||| | | || | Sbjct 3692947 AATTCCCTCTTTGTC-CTGAATTTTAGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGA 3693005 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | |||| || | ||||||||||| |||||||| || ||||| ||||| Sbjct 3693006 CTTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 3693054 Score = 111 bits (122), Expect = 2e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||||| ||| | ||| | | || ||||| |||||||||||||| Sbjct 3693283 GCCTCCACGAAGACGCAGAACAAGATGAAGCGTAGATTCCTTCTGAATGTTGTAGTCAGA 3693342 Query 138447 CATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | ||| | || | ||||| ||||| || || | | |||| | ||| ||||| || |||| Sbjct 3693343 AAGAGTTCTGCCA-TCCTCTAGTTGCTTTCCAGCAAAGATCAAACGTTGTTGATCTGGAG 3693401 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 | ||||||||||| || ||| || ||| | | ||| | ||||| | | |||| Sbjct 3693402 GAATACCTTCTTTATCTTGGATCTTAGCTTTGACATTTTCGATAGTGTCAGAAGCTTCCA 3693461 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | ||||| ||||| || ||||||||||| || |||||| Sbjct 3693462 CCTCAAGGGTGATGGTTTTTCCAGTGAGGGTTTTTACAAAGATTTGCATG 3693511 Score = 107 bits (118), Expect = 2e-18 Identities = 157/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGA 138458 || |||||||| || | | || || ||||| |||||||| || | ||| | || | Sbjct 3691700 CGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAAAGAGTTCTGCCA 3691759 Query 138459 GTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTT 138518 || || |||||||| |||| | || ||||||||||| ||||| || || || ||||| Sbjct 3691760 -TCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGAATTCCCTCTTT 3691818 Query 138519 GTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCA 138577 ||| ||| |||| | |||| | ||| | |||||| | | || || |||| || | Sbjct 3691819 GTC-CTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCTTCGACTTCGAGGGTAA 3691877 Query 138578 GCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||||||| |||||||| || ||||| ||||| Sbjct 3691878 TGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 3691914 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||||| ||| | || | | || || || ||||||||||| ||| Sbjct 3693056 CCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAATCGGAA 3693115 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | || || | |||||| |||| | || ||||||||||| ||||| || Sbjct 3693116 AGAGTTCTACCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGA 3693175 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| ||| |||| | |||| | ||| | ||||| | | || || Sbjct 3693176 ATTCCCTCTTTGTC-CTGAATTTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAAC 3693234 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 || | || | |||||||| || ||||| |||||||| ||||||||| || Sbjct 3693235 TTCAAGGGTGATGGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCATGCCT 3693286 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||||| ||| | || | | || || || ||||||||||||||| Sbjct 3692600 CCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGAA 3692659 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | || || | |||||| |||| | || ||||||||||| ||||| || Sbjct 3692660 AGAGTTCTACCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGA 3692719 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| ||| |||| | |||| | ||| | ||||| | | || || Sbjct 3692720 ATTCCCTCTTTGTC-CTGAATTTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAAC 3692778 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||| || |||||||| || || || ||||| Sbjct 3692779 TTCAAGGGTGATGGTTTTACCGGTGAGAGTTTTCACGAAGATTTGCAT 3692826 >seq1181 Length=949089 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || ||||| | ||| ||||| | | | || ||||| ||||| || ||||| Sbjct 810978 CCACCACGTAAACGGAGAACCAAATGCAAGGTAGATTCCTTCTGAATATTATAGTCAG-- 811035 Query 138448 ATAGTACGCGAG--TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | ||| |||| || || |||||||| |||| |||||| | ||| |||||||||| Sbjct 811036 AAAGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAGATTAACCTCTGCTGGTCCGGAG 811095 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 | || ||||| || || ||| |||| | ||| | | || | ||||| | || || Sbjct 811096 GAATTCCTTCCTTATC-TTGAATTTTGGCTTTGACATTCTCAATCGTGTCCGACGCTTCG 811154 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || | || | |||||||| || || ||||| |||||||| ||||| Sbjct 811155 ACTTCCAAAGTGATTGTTTTACCGGTAAGCGTTTTAACAAAAATTTGCAT 811204 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 |||||| ||||| | | || ||||||||||| |||||||| | ||||| ||| Sbjct 810764 CAAAACCAAATGCAATGTGGATTCCTTTTGAATATTGTAGTCAGAAAGTGTACGACCGTC 810823 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || |||||||| |||| |||| | | ||| |||||||| || || ||||| ||||| Sbjct 810824 TTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGCTGGTCCGGTGGGATTCCTTCCTTGTC 810883 Query 138522 GGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCG 138580 ||| |||| | ||| | | || | || || | || ||| || || | ||| | | Sbjct 810884 -CTGAATTTTGGCTTTGACATTCTCGATAGTATCTGACGCCTCAACTTCCAACGTGATGG 810942 Query 138581 TTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || || |||| || || |||||||||||||| Sbjct 810943 TCTTTCCTGTCAATGTCTTGACAAAAATCTGCAT 810976 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | | |||||| ||||| | | || || || ||||| || ||||| Sbjct 809838 CCGCCGCGAAGCCTCAAAACCAAATGCAATGTGGATTCTTTCTGAATATTATAGTCAGAA 809897 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||| || |||||||| |||| |||| | | |||||||||||| || Sbjct 809898 AGTGTACGACCGTCTTCAAGTTGTTTCCCGGCGAAGATCAACCTCTGTTGGTCCGGTGGG 809957 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| |||| | ||| | | || | ||||| | || || || Sbjct 809958 ATTCCTTCCTTGTC-TTGAATTTTGGCTTTGACATTCTCGATCGTGTCCGACGCTTCGAC 810016 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||| || || ||||| |||||||| ||||| Sbjct 810017 TTCCAAAGTGATTGTTTTACCGGTAAGCGTTTTGACAAAAATTTGCAT 810064 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || || ||||| || |||||| | ||| || ||||| || || || || | Sbjct 809643 GATTCTTTCTGAATATTATAGTCGGATAAAGTCCGTCCATCCTCTAGCTGCTTGCCCGCG 809702 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | ||||| | ||||| || ||||| || |||||||| || ||| |||| | || | Sbjct 809703 AAAATTAGTCTTTGTTGATCGGGAGGAATGCCTTCTTTATCT-TGAATTTTCGCCTTCAC 809761 Query 138541 -TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | ||||| | | || ||||| | ||| | ||||||||||| |||||||| Sbjct 809762 GTTTTCAATCGTGTCTGAAGCTTCGACCTCCAGCGTAATAGTTTTACCAGTGAGAGTTTT 809821 Query 138600 TACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 809822 GACAAAAATCTGCAT 809836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496252784916000